Strain Fitness in Shewanella oneidensis MR-1 around SO4207

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,371,706	-		SO4205	0.61	-0.4
4,371,706	-		SO4205	0.61	+0.4
4,371,802	+		SO4205	0.80	+0.7
4,371,884	+				-2.7
4,371,889	+				-0.4
4,371,889	+				+1.6
4,372,197	+		SO4206	0.36	-1.1
4,372,232	+		SO4206	0.40	-1.6
4,372,232	+		SO4206	0.40	+0.5
4,372,240	-		SO4206	0.41	+1.0
4,372,257	+		SO4206	0.43	+0.3
4,372,375	-		SO4206	0.58	-0.2
4,372,377	+		SO4206	0.58	-0.5
4,372,385	-		SO4206	0.59	-2.0
4,372,399	+		SO4206	0.61	-0.8
4,372,442	+		SO4206	0.66	-0.0
4,372,450	-		SO4206	0.67	-0.9
4,372,530	+		SO4206	0.77	+0.1
4,372,558	+		SO4206	0.81	-0.0
4,372,621	-		SO4206	0.89	-0.3
4,372,780	+				-2.7
4,372,795	+				-1.3
4,372,795	+				+0.7
4,372,838	+				-0.6
4,372,976	-		SO4207	0.14	-0.9
4,372,981	+		SO4207	0.15	-0.6
4,373,048	+		SO4207	0.18	+0.3
4,373,083	+		SO4207	0.20	-0.1
4,373,095	+		SO4207	0.21	+0.7
4,373,103	-		SO4207	0.21	+1.3
4,373,260	+		SO4207	0.30	+0.6
4,373,338	+		SO4207	0.34	-0.1
4,373,556	+		SO4207	0.45	-0.9
4,373,564	-		SO4207	0.46	+0.3
4,373,564	-		SO4207	0.46	-0.5
4,373,595	-		SO4207	0.47	-0.1
4,373,642	-		SO4207	0.50	-0.8
4,373,702	+		SO4207	0.53	-2.4
4,373,710	-		SO4207	0.54	+1.0
4,373,717	-		SO4207	0.54	+0.4
4,373,740	-		SO4207	0.55	+0.6
4,373,750	-		SO4207	0.56	-2.4
4,373,807	-		SO4207	0.59	-1.6
4,373,819	-		SO4207	0.59	-0.8
4,373,847	-		SO4207	0.61	-2.5
4,373,865	-		SO4207	0.62	-1.9
4,373,877	+		SO4207	0.62	+0.2
4,373,878	-		SO4207	0.63	-0.2
4,374,001	+		SO4207	0.69	+1.4
4,374,001	+		SO4207	0.69	-0.4
4,374,329	+		SO4207	0.87	-0.8
4,374,436	+				-0.7
4,374,456	-				+0.1
4,374,468	+				-1.2
4,374,468	+				-0.1
4,374,476	-				-0.1
4,374,478	+				-1.9
4,374,515	-				+0.1
4,374,610	+				-0.7
4,374,767	+	hemB-2	SO4208	0.17	+0.5
4,375,001	-	hemB-2	SO4208	0.41	+0.1
4,375,020	+	hemB-2	SO4208	0.42	+1.4
4,375,127	+	hemB-2	SO4208	0.53	-0.4
4,375,194	+	hemB-2	SO4208	0.60	+0.0
4,375,202	-	hemB-2	SO4208	0.60	-2.4
4,375,321	-	hemB-2	SO4208	0.72	+0.5
4,375,355	-	hemB-2	SO4208	0.76	-0.5
4,375,379	+	hemB-2	SO4208	0.78	+0.1
4,375,416	+	hemB-2	SO4208	0.82	-1.5
4,375,515	+				-2.2