Strain Fitness in Shewanella oneidensis MR-1 around SO4180

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,351,387	-		SO4179	0.28	+1.3
4,351,410	+		SO4179	0.30	-0.9
4,351,418	-		SO4179	0.31	-1.3
4,351,484	-		SO4179	0.36	+1.2
4,351,490	+		SO4179	0.37	-0.0
4,351,490	+		SO4179	0.37	-0.4
4,351,503	-		SO4179	0.38	+1.7
4,351,527	-		SO4179	0.40	-1.3
4,351,577	-		SO4179	0.44	-2.7
4,351,588	+		SO4179	0.45	+0.0
4,351,711	+		SO4179	0.55	-2.5
4,351,771	-		SO4179	0.60	-0.3
4,351,798	+		SO4179	0.62	-2.1
4,351,798	+		SO4179	0.62	-1.3
4,351,798	+		SO4179	0.62	-1.8
4,351,798	+		SO4179	0.62	+1.1
4,351,798	+		SO4179	0.62	+2.1
4,351,806	-		SO4179	0.63	+0.0
4,351,806	-		SO4179	0.63	-1.6
4,351,806	-		SO4179	0.63	-0.3
4,351,825	+		SO4179	0.65	-2.4
4,351,833	-		SO4179	0.65	-2.3
4,351,941	+		SO4179	0.74	-0.7
4,351,941	-		SO4179	0.74	-0.2
4,352,015	-		SO4179	0.80	-1.6
4,352,053	-		SO4179	0.83	-1.8
4,352,053	-		SO4179	0.83	-0.6
4,352,053	-		SO4179	0.83	+0.9
4,352,099	-		SO4179	0.87	+0.0
4,352,133	+				-1.3
4,352,165	+				+0.5
4,352,177	-				-0.2
4,352,191	+				+0.3
4,352,270	-				-0.8
4,352,411	+				-1.2
4,352,440	+				+0.2
4,352,448	-				-0.8
4,352,448	-				-0.9
4,352,448	-				+0.5
4,352,534	-		SO4180	0.12	+1.2
4,352,598	+		SO4180	0.17	-0.5
4,352,598	+		SO4180	0.17	+0.5
4,352,606	-		SO4180	0.17	-0.4
4,352,627	+		SO4180	0.19	-2.5
4,352,627	+		SO4180	0.19	+1.9
4,352,645	-		SO4180	0.20	-2.4
4,352,659	-		SO4180	0.21	+0.2
4,352,759	+		SO4180	0.28	+0.5
4,352,767	-		SO4180	0.29	+0.8
4,352,767	-		SO4180	0.29	+0.6
4,352,782	-		SO4180	0.30	+0.7
4,352,793	+		SO4180	0.31	+0.3
4,352,804	+		SO4180	0.31	-0.6
4,352,829	+		SO4180	0.33	+0.5
4,352,856	+		SO4180	0.35	-2.1
4,352,880	+		SO4180	0.37	-0.1
4,352,895	+		SO4180	0.38	-0.8
4,352,971	-		SO4180	0.43	-0.7
4,352,988	+		SO4180	0.45	+0.0
4,352,992	+		SO4180	0.45	-1.6
4,352,996	-		SO4180	0.45	-0.3
4,353,000	-		SO4180	0.46	-2.2
4,353,000	-		SO4180	0.46	-1.3
4,353,000	-		SO4180	0.46	+1.1
4,353,000	-		SO4180	0.46	+0.4
4,353,000	-		SO4180	0.46	-1.2
4,353,006	-		SO4180	0.46	+1.3
4,353,006	-		SO4180	0.46	-0.1
4,353,040	+		SO4180	0.48	+0.6
4,353,040	+		SO4180	0.48	-1.8
4,353,040	+		SO4180	0.48	-0.5
4,353,040	+		SO4180	0.48	-1.3
4,353,040	+		SO4180	0.48	-1.6
4,353,047	-		SO4180	0.49	-1.7
4,353,048	-		SO4180	0.49	-0.2
4,353,048	-		SO4180	0.49	-0.9
4,353,048	-		SO4180	0.49	-0.5
4,353,098	-		SO4180	0.53	-0.4
4,353,098	-		SO4180	0.53	+0.5
4,353,098	-		SO4180	0.53	-2.3
4,353,122	+		SO4180	0.54	-1.0
4,353,122	+		SO4180	0.54	-0.8
4,353,122	+		SO4180	0.54	-0.8
4,353,122	+		SO4180	0.54	-1.5
4,353,122	+		SO4180	0.54	-1.8
4,353,141	-		SO4180	0.56	-2.2
4,353,146	-		SO4180	0.56	-0.8
4,353,178	-		SO4180	0.58	+1.7
4,353,289	+		SO4180	0.66	-0.9
4,353,305	+		SO4180	0.67	-1.5
4,353,313	-		SO4180	0.68	-2.7
4,353,313	-		SO4180	0.68	-1.3
4,353,367	+		SO4180	0.72	-1.1
4,353,388	+		SO4180	0.73	+0.2
4,353,414	-		SO4180	0.75	-0.4
4,353,462	-		SO4180	0.79	-1.1
4,353,462	-		SO4180	0.79	-0.8
4,353,560	+		SO4180	0.86	-0.0
4,353,566	+		SO4180	0.86	+0.6
4,353,568	+		SO4180	0.86	-0.5
4,353,568	-		SO4180	0.86	+0.7
4,353,568	-		SO4180	0.86	+0.3
4,353,568	-		SO4180	0.86	-0.9
4,353,568	-		SO4180	0.86	-1.9
4,353,574	-		SO4180	0.87	-0.7
4,353,574	-		SO4180	0.87	-2.3
4,353,606	+		SO4180	0.89	-0.4
4,353,606	+		SO4180	0.89	-2.3
4,353,614	-		SO4180	0.90	-0.3
4,353,614	-		SO4180	0.90	+0.4
4,353,619	+				-0.9
4,353,619	+				-1.0
4,353,619	+				-1.2
4,353,619	+				+0.2
4,353,619	+				-0.3
4,353,627	-				-3.1
4,353,627	-				+0.6
4,353,644	+				-1.0
4,353,652	-				+0.7
4,353,653	-				+0.1
4,353,676	-				+1.2
4,353,686	-				-2.3
4,353,686	-				-1.6
4,353,696	-				-1.6
4,353,774	+				-1.5
4,353,774	+				-1.9
4,353,796	+				+0.3
4,353,796	+				-1.9
4,353,803	+				-2.1
4,353,804	+				-1.1
4,353,804	+				-1.4
4,353,804	-				-0.7
4,353,810	+				-1.7
4,353,811	-				+0.4
4,353,811	-				-0.7
4,353,811	-				+0.8
4,353,818	-				+0.1
4,353,847	+				-0.7
4,353,848	-				+0.0
4,353,850	+				+0.0
4,353,852	+				+0.3
4,353,860	-				+1.7
4,353,860	-				+0.6
4,353,860	-				-1.3
4,353,860	-				+0.5
4,353,868	+				-0.3
4,353,869	+				+1.9
4,353,876	-				+0.0
4,354,125	-				-1.2
4,354,174	-		SO_4181	0.15	-0.9
4,354,210	-		SO_4181	0.19	-0.3
4,354,221	-		SO_4181	0.20	-1.8
4,354,296	-		SO_4181	0.28	+0.3
4,354,313	-		SO_4181	0.30	-0.5
4,354,363	+		SO_4181	0.35	-1.4
4,354,373	+		SO_4181	0.36	-1.0
4,354,440	-		SO_4181	0.44	-1.8
4,354,532	-		SO_4181	0.54	-3.1
4,354,532	-		SO_4181	0.54	+1.3
4,354,552	+		SO_4181	0.56	-2.0
4,354,557	+		SO_4181	0.56	-0.8
4,354,590	+		SO_4181	0.60	-0.9
4,354,590	+		SO_4181	0.60	-1.6
4,354,598	-		SO_4181	0.61	-0.8
4,354,676	-		SO_4181	0.69	+1.3
4,354,723	+		SO_4181	0.75	-1.7
4,354,723	+		SO_4181	0.75	-1.6