Strain Fitness in Shewanella oneidensis MR-1 around SO3936

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,081,010	+	vacB	SO3935	0.61	+1.1
4,081,081	-	vacB	SO3935	0.64	+2.4
4,081,085	-	vacB	SO3935	0.64	-0.5
4,081,249	-	vacB	SO3935	0.71	-0.7
4,081,553	-	vacB	SO3935	0.84	+0.4
4,081,655	-	vacB	SO3935	0.88	+0.5
4,081,676	+	vacB	SO3935	0.89	+0.1
4,081,789	-				-0.9
4,081,814	+				+0.9
4,082,011	+				+0.0
4,082,050	+				-1.1
4,082,058	-	motX	SO3936	0.11	-1.6
4,082,121	+	motX	SO3936	0.21	-1.0
4,082,121	+	motX	SO3936	0.21	-1.8
4,082,142	+	motX	SO3936	0.25	-2.9
4,082,149	-	motX	SO3936	0.26	-1.4
4,082,151	+	motX	SO3936	0.26	-3.6
4,082,151	+	motX	SO3936	0.26	-2.6
4,082,159	-	motX	SO3936	0.27	-1.0
4,082,308	-	motX	SO3936	0.51	-2.0
4,082,313	-	motX	SO3936	0.52	-0.2
4,082,318	-	motX	SO3936	0.53	-2.0
4,082,331	+	motX	SO3936	0.55	-1.7
4,082,337	+	motX	SO3936	0.56	-1.9
4,082,505	-	motX	SO3936	0.83	-2.4
4,082,560	-				-2.9
4,082,572	+				+0.1
4,082,599	+				-0.5
4,082,791	+				+1.3
4,082,792	+				+1.5
4,082,937	+	purA	SO3937	0.14	+1.7
4,082,947	+	purA	SO3937	0.15	+1.8
4,083,046	+	purA	SO3937	0.23	+2.1
4,083,070	+	purA	SO3937	0.24	-1.3
4,083,088	+	purA	SO3937	0.26	+0.5
4,083,088	+	purA	SO3937	0.26	-0.4
4,083,091	-	purA	SO3937	0.26	-0.1
4,083,237	+	purA	SO3937	0.37	+0.4
4,083,237	+	purA	SO3937	0.37	-0.3
4,083,237	+	purA	SO3937	0.37	+0.9
4,083,245	-	purA	SO3937	0.38	-0.0
4,083,245	-	purA	SO3937	0.38	+0.6
4,083,245	-	purA	SO3937	0.38	-2.7
4,083,251	-	purA	SO3937	0.38	-0.4
4,083,338	-	purA	SO3937	0.45	-0.4
4,083,348	-	purA	SO3937	0.46	+0.2
4,083,359	+	purA	SO3937	0.47	-4.0
4,083,379	-	purA	SO3937	0.48	+1.0
4,083,470	+	purA	SO3937	0.55	+1.4
4,083,470	+	purA	SO3937	0.55	-2.5
4,083,585	+	purA	SO3937	0.64	+1.3
4,083,585	+	purA	SO3937	0.64	-0.2