Strain Fitness in Shewanella oneidensis MR-1 around SO3864

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,009,845	-				-0.1
4,009,894	+				-0.3
4,009,896	+				+0.9
4,009,902	-				+0.6
4,009,904	-				-1.1
4,010,028	+				+0.2
4,010,074	-				+1.3
4,010,087	-				-3.0
4,010,087	-				+0.7
4,010,160	+	modA	SO3863	0.14	-0.5
4,010,168	-	modA	SO3863	0.15	-1.8
4,010,228	+	modA	SO3863	0.23	-0.4
4,010,229	+	modA	SO3863	0.23	-1.4
4,010,343	+	modA	SO3863	0.38	+0.5
4,010,351	-	modA	SO3863	0.39	-0.7
4,010,372	-	modA	SO3863	0.42	+1.0
4,010,452	+	modA	SO3863	0.52	+1.5
4,010,632	+	modA	SO3863	0.76	+1.1
4,010,690	-	modA	SO3863	0.84	+0.9
4,010,709	+	modA	SO3863	0.86	-0.9
4,010,717	-	modA	SO3863	0.87	+0.5
4,010,717	-	modA	SO3863	0.87	+0.7
4,010,722	+	modA	SO3863	0.88	-0.1
4,010,753	-				-0.7
4,010,785	-				-0.1
4,010,810	+				-0.4
4,010,879	-				+1.2
4,010,887	+				-1.3
4,010,895	-	modB	SO3864	0.11	-0.4
4,010,913	-	modB	SO3864	0.13	-0.1
4,010,913	-	modB	SO3864	0.13	-2.4
4,011,036	+	modB	SO3864	0.30	-1.0
4,011,122	+	modB	SO3864	0.42	-0.3
4,011,177	+	modB	SO3864	0.49	-1.3
4,011,185	-	modB	SO3864	0.50	+0.1
4,011,216	-	modB	SO3864	0.54	-2.1
4,011,355	+	modB	SO3864	0.73	+1.2
4,011,489	-				-0.1
4,011,590	-				+0.1
4,011,645	+				+2.0
4,011,653	-				-1.8
4,011,659	-	modC	SO3865	0.10	-1.5
4,011,663	-	modC	SO3865	0.11	+0.6
4,011,918	+	modC	SO3865	0.34	+0.6
4,012,005	+	modC	SO3865	0.42	+0.1
4,012,041	+	modC	SO3865	0.46	-1.6
4,012,053	+	modC	SO3865	0.47	+0.1
4,012,105	+	modC	SO3865	0.51	-0.5
4,012,216	+	modC	SO3865	0.62	+0.7
4,012,303	-	modC	SO3865	0.70	-2.0
4,012,316	+	modC	SO3865	0.71	+1.2
4,012,396	+	modC	SO3865	0.78	-1.1
4,012,396	-	modC	SO3865	0.78	+0.4
4,012,420	+	modC	SO3865	0.80	-0.3
4,012,502	-	modC	SO3865	0.88	+0.9
4,012,522	+	modC	SO3865	0.90	-1.4
4,012,540	+				+0.9