Strain Fitness in Shewanella oneidensis MR-1 around SO3851

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,997,531	-				+1.5
3,997,677	-				+0.4
3,997,677	-				-2.3
3,997,684	-				+0.6
3,997,771	-		SO3849	0.15	+0.6
3,998,153	-		SO3849	0.85	+0.2
3,998,187	+				-1.4
3,998,187	+				-0.9
3,998,204	+				+0.2
3,998,212	-				+0.1
3,998,212	-				+1.5
3,998,212	-				-0.4
3,998,217	-				-1.0
3,998,222	-				-0.5
3,998,348	+		SO3850	0.20	+0.5
3,998,356	+		SO3850	0.25	-1.5
3,998,358	+		SO3850	0.26	-2.4
3,998,361	-				+2.0
3,998,540	+		SO3851	0.44	-2.5
3,998,648	-				-0.4
3,998,711	-				-0.1
3,998,867	-		SO3852	0.32	+0.9
3,998,867	-		SO3852	0.32	-2.1
3,998,937	-		SO3852	0.47	-1.2
3,998,971	-		SO3852	0.55	-0.0
3,999,036	+		SO3852	0.69	-1.7
3,999,076	-		SO3852	0.77	-0.8
3,999,115	+		SO3852	0.86	-1.1
3,999,124	-		SO3852	0.88	-1.6
3,999,149	-				+3.3
3,999,176	+				-0.9
3,999,176	+				-1.1
3,999,176	+				-0.7
3,999,184	-				-2.0
3,999,184	-				+0.5
3,999,184	-				-0.4
3,999,184	-				-0.0
3,999,196	+				-0.1
3,999,271	+				+0.9
3,999,320	+		SO3853	0.12	-0.1
3,999,511	-				-0.4