Strain Fitness in Shewanella oneidensis MR-1 around SO3819

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,968,430	+	panE	SO3817	0.39	-0.9
3,968,437	+	panE	SO3817	0.40	-0.1
3,968,437	+	panE	SO3817	0.40	+1.2
3,968,445	-	panE	SO3817	0.41	+1.9
3,968,445	-	panE	SO3817	0.41	-3.0
3,968,455	+	panE	SO3817	0.42	-1.2
3,968,463	-	panE	SO3817	0.42	+1.5
3,968,469	+	panE	SO3817	0.43	-0.8
3,968,469	+	panE	SO3817	0.43	-1.2
3,968,477	-	panE	SO3817	0.44	+1.6
3,968,541	+	panE	SO3817	0.50	-1.2
3,968,549	-	panE	SO3817	0.51	+0.5
3,968,573	+	panE	SO3817	0.54	+1.3
3,968,573	+	panE	SO3817	0.54	+0.7
3,968,576	-	panE	SO3817	0.54	-0.9
3,968,581	-	panE	SO3817	0.54	-2.8
3,968,581	-	panE	SO3817	0.54	+1.6
3,968,586	-	panE	SO3817	0.55	+0.2
3,968,636	-	panE	SO3817	0.60	+0.9
3,968,676	-	panE	SO3817	0.64	-1.9
3,968,871	-	panE	SO3817	0.84	+0.5
3,968,899	-	panE	SO3817	0.87	+0.6
3,969,009	-				+1.1
3,969,081	+				+0.2
3,969,157	+				+0.6
3,969,385	-		SO3819	0.18	-0.7
3,969,455	-		SO3819	0.39	-1.0
3,969,572	+		SO3819	0.73	-2.1
3,969,580	-		SO3819	0.76	-0.9
3,969,580	-		SO3819	0.76	-1.6
3,969,580	-		SO3819	0.76	+0.1
3,969,641	+				-1.6
3,969,698	-				-1.4
3,969,724	-				+1.5
3,969,746	+				-0.7
3,969,746	+				-1.1
3,969,822	-				-0.7
3,969,824	+				-1.1
3,969,994	+		SO3819.1	0.22	-0.2
3,970,041	+		SO3819.1	0.40	-1.3
3,970,083	-		SO3819.1	0.57	+0.8
3,970,117	+		SO3819.1	0.70	+2.7
3,970,214	-				+0.8
3,970,235	+				+0.8
3,970,284	-		SO3819.3	0.34	-0.2
3,970,308	-		SO3819.3	0.42	-0.9
3,970,367	-		SO3819.3	0.64	+2.6
3,970,367	-		SO3819.3	0.64	+0.0
3,970,394	+		SO3819.3	0.74	+1.9
3,970,502	+		SO3819.4	0.26	+2.2
3,970,565	+		SO3819.4	0.77	+0.6