Strain Fitness in Shewanella oneidensis MR-1 around SO3781

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,932,446	+	cydD	SO3780	0.71	-0.6
3,932,697	+	cydD	SO3780	0.84	-0.6
3,932,735	+	cydD	SO3780	0.86	+0.4
3,932,735	+	cydD	SO3780	0.86	-0.1
3,932,735	+	cydD	SO3780	0.86	-1.6
3,932,735	+	cydD	SO3780	0.86	+1.4
3,932,737	-	cydD	SO3780	0.86	-0.9
3,932,755	+	cydD	SO3780	0.87	-0.6
3,932,764	-	cydD	SO3780	0.87	-1.1
3,932,862	+				+0.1
3,933,105	+				-0.5
3,933,113	-				-0.8
3,933,120	+				+0.2
3,933,143	+				-0.2
3,933,143	+				-1.7
3,933,256	-				-0.4
3,933,262	-				+1.8
3,933,264	+				-2.0
3,933,317	+				+1.4
3,933,317	+				+0.9
3,933,325	-				+0.0
3,933,328	+				-2.2
3,933,333	+				+0.4
3,933,336	-				-0.4
3,933,341	-				-1.1
3,933,362	+				+1.1
3,933,362	+				-0.6
3,933,362	+				+0.0
3,933,370	-				-1.1
3,933,556	+		SO3781	0.29	-0.7
3,933,653	+		SO3781	0.48	-0.4
3,933,705	-		SO3781	0.58	-1.9
3,933,730	+		SO3781	0.63	-0.5
3,933,730	+		SO3781	0.63	-0.4
3,933,766	+		SO3781	0.70	+0.1
3,933,854	+		SO3781	0.87	-0.4
3,933,905	+				+0.3
3,933,913	-				+0.5
3,933,950	+				-1.7
3,934,019	-				-0.6
3,934,026	-				+0.6
3,934,057	+				-2.8
3,934,110	-		SO3782	0.11	+1.3
3,934,113	+		SO3782	0.11	-0.3
3,934,147	+		SO3782	0.15	+0.6
3,934,153	-		SO3782	0.15	-1.3
3,934,155	-		SO3782	0.16	-0.0
3,934,217	+		SO3782	0.22	-1.4
3,934,258	+		SO3782	0.27	+0.8
3,934,286	+		SO3782	0.30	-0.1
3,934,329	+		SO3782	0.34	+0.2
3,934,356	+		SO3782	0.37	-1.3
3,934,479	+		SO3782	0.50	-1.5
3,934,557	-		SO3782	0.58	+0.4
3,934,572	-		SO3782	0.60	+1.0
3,934,716	-		SO3782	0.75	+0.4
3,934,716	-		SO3782	0.75	-1.3
3,934,716	-		SO3782	0.75	-1.3
3,934,730	+		SO3782	0.77	-2.0
3,934,778	+		SO3782	0.82	-0.1
3,934,788	+		SO3782	0.83	-1.2
3,934,832	+		SO3782	0.87	+1.2
3,934,853	+		SO3782	0.90	-1.2
3,934,864	+				-0.7
3,934,872	-				+0.5
3,934,872	-				-1.0
3,934,873	-				+1.2
3,934,906	+				+0.1
3,934,914	-				-3.1