Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3761 and SO3762 are separated by 15 nucleotides SO3762 and SO3763 are separated by 4 nucleotides
SO3761: SO3761 - hypothetical protein (NCBI ptt file), at 3,910,469 to 3,911,458
SO3761
SO3762: SO3762 - hypothetical protein (NCBI ptt file), at 3,911,474 to 3,912,373
SO3762
SO3763: SO3763 - spermine/spermidine synthase family protein (NCBI ptt file), at 3,912,378 to 3,914,102
SO3763
Position (kb)
3911
3912
3913 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3910.515 kb on - strand at 3910.520 kb on + strand at 3910.602 kb on - strand, within SO3761 at 3910.625 kb on + strand, within SO3761 at 3910.655 kb on + strand, within SO3761 at 3910.754 kb on + strand, within SO3761 at 3910.772 kb on - strand, within SO3761 at 3910.848 kb on + strand, within SO3761 at 3910.856 kb on - strand, within SO3761 at 3910.957 kb on + strand, within SO3761 at 3911.172 kb on - strand, within SO3761 at 3911.279 kb on + strand, within SO3761 at 3911.328 kb on + strand, within SO3761 at 3911.391 kb on + strand at 3911.399 kb on - strand at 3911.579 kb on + strand, within SO3762 at 3911.612 kb on - strand, within SO3762 at 3911.641 kb on + strand, within SO3762 at 3911.760 kb on + strand, within SO3762 at 3911.768 kb on - strand, within SO3762 at 3911.909 kb on + strand, within SO3762 at 3911.909 kb on + strand, within SO3762 at 3911.917 kb on - strand, within SO3762 at 3911.917 kb on - strand, within SO3762 at 3911.922 kb on - strand, within SO3762 at 3911.951 kb on - strand, within SO3762 at 3911.964 kb on - strand, within SO3762 at 3911.980 kb on + strand, within SO3762 at 3912.042 kb on + strand, within SO3762 at 3912.219 kb on + strand, within SO3762 at 3912.227 kb on + strand, within SO3762 at 3912.235 kb on - strand, within SO3762 at 3912.333 kb on + strand at 3912.398 kb on - strand at 3912.460 kb on - strand at 3912.524 kb on - strand at 3912.659 kb on + strand, within SO3763 at 3912.736 kb on + strand, within SO3763 at 3912.769 kb on - strand, within SO3763 at 3912.769 kb on - strand, within SO3763 at 3912.871 kb on + strand, within SO3763 at 3912.871 kb on + strand, within SO3763 at 3912.879 kb on - strand, within SO3763 at 3912.935 kb on + strand, within SO3763 at 3912.943 kb on - strand, within SO3763 at 3912.973 kb on + strand, within SO3763 at 3912.973 kb on + strand, within SO3763 at 3912.973 kb on + strand, within SO3763 at 3912.981 kb on - strand, within SO3763 at 3912.981 kb on - strand, within SO3763 at 3912.981 kb on - strand, within SO3763 at 3913.021 kb on + strand, within SO3763 at 3913.117 kb on + strand, within SO3763 at 3913.163 kb on - strand, within SO3763 at 3913.205 kb on + strand, within SO3763 at 3913.236 kb on - strand, within SO3763 at 3913.236 kb on - strand, within SO3763 at 3913.236 kb on - strand, within SO3763 at 3913.249 kb on + strand, within SO3763 at 3913.249 kb on + strand, within SO3763 at 3913.254 kb on + strand, within SO3763 at 3913.262 kb on - strand, within SO3763 at 3913.365 kb on + strand, within SO3763 at 3913.373 kb on - strand, within SO3763
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 3,910,515 - -0.4 3,910,520 + -0.8 3,910,602 - SO3761 0.13 -0.6 3,910,625 + SO3761 0.16 +0.0 3,910,655 + SO3761 0.19 -1.3 3,910,754 + SO3761 0.29 +1.9 3,910,772 - SO3761 0.31 +0.4 3,910,848 + SO3761 0.38 -0.9 3,910,856 - SO3761 0.39 +1.5 3,910,957 + SO3761 0.49 +1.4 3,911,172 - SO3761 0.71 -0.9 3,911,279 + SO3761 0.82 -0.8 3,911,328 + SO3761 0.87 +0.6 3,911,391 + -1.0 3,911,399 - -0.9 3,911,579 + SO3762 0.12 -1.4 3,911,612 - SO3762 0.15 -0.2 3,911,641 + SO3762 0.19 +1.5 3,911,760 + SO3762 0.32 +0.7 3,911,768 - SO3762 0.33 -1.6 3,911,909 + SO3762 0.48 +1.0 3,911,909 + SO3762 0.48 -0.3 3,911,917 - SO3762 0.49 -0.6 3,911,917 - SO3762 0.49 -0.4 3,911,922 - SO3762 0.50 +0.7 3,911,951 - SO3762 0.53 +1.8 3,911,964 - SO3762 0.54 +1.0 3,911,980 + SO3762 0.56 +1.5 3,912,042 + SO3762 0.63 -1.1 3,912,219 + SO3762 0.83 -0.6 3,912,227 + SO3762 0.84 -0.4 3,912,235 - SO3762 0.85 +1.0 3,912,333 + -1.8 3,912,398 - +0.3 3,912,460 - +1.6 3,912,524 - -0.6 3,912,659 + SO3763 0.16 -0.8 3,912,736 + SO3763 0.21 -0.3 3,912,769 - SO3763 0.23 -0.8 3,912,769 - SO3763 0.23 -0.1 3,912,871 + SO3763 0.29 +0.7 3,912,871 + SO3763 0.29 -1.4 3,912,879 - SO3763 0.29 +0.6 3,912,935 + SO3763 0.32 +0.9 3,912,943 - SO3763 0.33 +1.1 3,912,973 + SO3763 0.34 +0.8 3,912,973 + SO3763 0.34 +0.7 3,912,973 + SO3763 0.34 +1.1 3,912,981 - SO3763 0.35 -1.1 3,912,981 - SO3763 0.35 -0.7 3,912,981 - SO3763 0.35 +1.9 3,913,021 + SO3763 0.37 -0.9 3,913,117 + SO3763 0.43 -0.2 3,913,163 - SO3763 0.46 -2.0 3,913,205 + SO3763 0.48 -0.5 3,913,236 - SO3763 0.50 -0.7 3,913,236 - SO3763 0.50 +0.9 3,913,236 - SO3763 0.50 -0.1 3,913,249 + SO3763 0.50 +1.3 3,913,249 + SO3763 0.50 +1.1 3,913,254 + SO3763 0.51 -1.2 3,913,262 - SO3763 0.51 -0.7 3,913,365 + SO3763 0.57 -0.1 3,913,373 - SO3763 0.58 -2.1
Or see this region's nucleotide sequence