Strain Fitness in Shewanella oneidensis MR-1 around SO3738

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,881,774	-	cysI	SO3737	0.48	-2.3
3,881,815	-	cysI	SO3737	0.50	-1.5
3,881,934	-	cysI	SO3737	0.57	+0.4
3,882,169	+	cysI	SO3737	0.71	-0.4
3,882,179	-	cysI	SO3737	0.72	-3.3
3,882,179	-	cysI	SO3737	0.72	-1.9
3,882,272	+	cysI	SO3737	0.77	+0.9
3,882,280	-	cysI	SO3737	0.78	-3.7
3,882,393	-	cysI	SO3737	0.84	-2.2
3,882,416	-	cysI	SO3737	0.86	-0.9
3,882,678	-				+0.4
3,882,765	-				-0.9
3,882,806	-				-1.5
3,882,847	-				-2.1
3,882,847	-				-0.6
3,882,927	-	cysJ	SO3738	0.11	-1.6
3,882,927	-	cysJ	SO3738	0.11	-0.6
3,883,497	+	cysJ	SO3738	0.42	+2.4
3,883,559	-	cysJ	SO3738	0.45	-1.5
3,883,574	-	cysJ	SO3738	0.46	-2.7
3,883,574	-	cysJ	SO3738	0.46	-2.7
3,883,658	+	cysJ	SO3738	0.51	+2.4
3,883,736	+	cysJ	SO3738	0.55	+0.4
3,883,744	-	cysJ	SO3738	0.55	-2.7
3,883,792	-	cysJ	SO3738	0.58	-0.9
3,883,956	+	cysJ	SO3738	0.67	+0.1
3,884,257	-	cysJ	SO3738	0.83	-1.4
3,884,257	-	cysJ	SO3738	0.83	-0.7
3,884,285	-	cysJ	SO3738	0.85	-0.7
3,884,373	+	cysJ	SO3738	0.90	+2.4
3,884,498	-				-2.3
3,884,577	+				-0.1
3,884,691	+				-1.3
3,884,729	+				-1.1
3,884,795	-				-1.8
3,884,900	+				+1.0
3,884,900	+				+1.4
3,884,900	+				+0.9
3,884,900	+				+1.6
3,884,900	+				+0.1
3,884,900	+				-1.9
3,884,908	-				+0.5
3,884,908	-				+0.1
3,884,908	-				+0.9
3,884,908	-				+0.6
3,884,908	-				+2.9
3,884,921	+				-0.0
3,884,966	-				-1.3
3,885,038	+				-2.4
3,885,046	-				-0.6
3,885,062	+				+0.7
3,885,070	-				+0.3
3,885,141	+	pntA	SO3740	0.11	-2.2
3,885,153	+	pntA	SO3740	0.12	-0.4
3,885,229	+	pntA	SO3740	0.17	+0.6
3,885,239	+	pntA	SO3740	0.17	+1.4
3,885,327	-	pntA	SO3740	0.23	-0.6
3,885,344	+	pntA	SO3740	0.24	-0.9