Strain Fitness in Shewanella oneidensis MR-1 around SO3737
Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-1 |
---|---|---|---|---|---|
remove | |||||
3,880,557 | - | cysH | SO3736 | 0.52 | +2.4 |
3,880,582 | + | cysH | SO3736 | 0.56 | +1.4 |
3,880,582 | + | cysH | SO3736 | 0.56 | +1.4 |
3,880,610 | - | cysH | SO3736 | 0.59 | +2.4 |
3,880,947 | + | +0.9 | |||
3,881,101 | - | -3.4 | |||
3,881,774 | - | cysI | SO3737 | 0.48 | -2.3 |
3,881,815 | - | cysI | SO3737 | 0.50 | -1.5 |
3,881,934 | - | cysI | SO3737 | 0.57 | +0.4 |
3,882,169 | + | cysI | SO3737 | 0.71 | -0.4 |
3,882,179 | - | cysI | SO3737 | 0.72 | -3.3 |
3,882,179 | - | cysI | SO3737 | 0.72 | -1.9 |
3,882,272 | + | cysI | SO3737 | 0.77 | +0.9 |
3,882,280 | - | cysI | SO3737 | 0.78 | -3.7 |
3,882,393 | - | cysI | SO3737 | 0.84 | -2.2 |
3,882,416 | - | cysI | SO3737 | 0.86 | -0.9 |
3,882,678 | - | +0.4 | |||
3,882,765 | - | -0.9 | |||
3,882,806 | - | -1.5 | |||
3,882,847 | - | -2.1 | |||
3,882,847 | - | -0.6 | |||
3,882,927 | - | cysJ | SO3738 | 0.11 | -1.6 |
3,882,927 | - | cysJ | SO3738 | 0.11 | -0.6 |
3,883,497 | + | cysJ | SO3738 | 0.42 | +2.4 |
3,883,559 | - | cysJ | SO3738 | 0.45 | -1.5 |
3,883,574 | - | cysJ | SO3738 | 0.46 | -2.7 |
3,883,574 | - | cysJ | SO3738 | 0.46 | -2.7 |
3,883,658 | + | cysJ | SO3738 | 0.51 | +2.4 |
Or see this region's nucleotide sequence