Strain Fitness in Shewanella oneidensis MR-1 around SO3591

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,753,895	-		SO3588	0.62	+1.7
3,753,902	+		SO3588	0.64	-0.9
3,754,053	-				-1.4
3,754,067	+				+0.6
3,754,528	+				+1.5
3,754,569	-				+1.8
3,754,619	+				+0.1
3,754,627	-				+0.3
3,754,634	+				+2.6
3,754,657	-				+1.6
3,754,657	-				-0.6
3,754,662	-				-0.8
3,754,898	+		SO3591	0.30	-1.9
3,754,997	+		SO3591	0.72	-1.4
3,754,997	+		SO3591	0.72	-0.5
3,755,005	-		SO3591	0.76	-3.4
3,755,066	+				+0.5
3,755,075	+				-1.9
3,755,083	-				+2.2
3,755,101	-				-0.1
3,755,181	-				+0.9
3,755,332	+				-0.9
3,755,332	+				+0.1
3,755,379	+				+1.2
3,755,390	+				+0.7
3,755,390	+				+0.1
3,755,390	+				-0.2
3,755,398	-				+0.3
3,755,398	-				+1.7
3,755,409	+				-1.2
3,755,432	-				-1.6
3,755,451	-				+2.2
3,755,532	+		SO3592	0.19	+2.7
3,755,546	-		SO3592	0.20	+1.6
3,755,649	+		SO3592	0.31	+1.2
3,755,649	+		SO3592	0.31	+1.5
3,755,649	+		SO3592	0.31	-1.4
3,755,657	-		SO3592	0.32	+0.3
3,755,657	-		SO3592	0.32	+1.2
3,755,657	-		SO3592	0.32	+1.4
3,755,657	-		SO3592	0.32	+0.2
3,755,659	-		SO3592	0.33	-0.3
3,755,706	-		SO3592	0.38	+0.6
3,755,716	-		SO3592	0.39	+1.6
3,755,763	+		SO3592	0.44	+2.6
3,755,773	+		SO3592	0.45	+1.9
3,755,773	+		SO3592	0.45	+1.0
3,755,773	+		SO3592	0.45	+2.3
3,755,773	+		SO3592	0.45	+2.2
3,755,773	+		SO3592	0.45	+0.8
3,755,781	-		SO3592	0.46	+1.4
3,755,781	-		SO3592	0.46	+0.6
3,755,781	-		SO3592	0.46	+2.4
3,755,781	-		SO3592	0.46	+0.0
3,755,781	-		SO3592	0.46	+1.2
3,755,781	-		SO3592	0.46	+1.4
3,755,781	-		SO3592	0.46	+0.7
3,755,797	-		SO3592	0.48	+0.5
3,755,813	+		SO3592	0.49	+3.8
3,755,823	+		SO3592	0.50	+2.9
3,755,833	+		SO3592	0.52	+1.5
3,755,841	-		SO3592	0.52	+1.8
3,755,841	-		SO3592	0.52	-1.2
3,755,841	-		SO3592	0.52	+2.0
3,755,905	+		SO3592	0.59	+1.3
3,755,908	-		SO3592	0.60	+2.2
3,755,910	+		SO3592	0.60	+2.8
3,755,917	+		SO3592	0.61	+2.3
3,755,918	-		SO3592	0.61	-0.9
3,755,918	-		SO3592	0.61	+0.5
3,755,927	+		SO3592	0.62	+2.4
3,755,934	-		SO3592	0.63	-0.8
3,755,987	-		SO3592	0.68	+1.0
3,755,994	+		SO3592	0.69	+2.9