Strain Fitness in Shewanella oneidensis MR-1 around SO3488

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,634,856	+		SO3485	0.50	-1.3
3,634,896	-		SO3485	0.54	+1.3
3,634,952	-		SO3485	0.59	+0.6
3,635,009	-		SO3485	0.64	+0.7
3,635,095	+		SO3485	0.71	+0.0
3,635,103	-		SO3485	0.72	+0.6
3,635,199	-		SO3485	0.80	-0.9
3,635,218	-		SO3485	0.82	-0.5
3,635,350	+				-0.5
3,635,351	-				-0.9
3,635,351	-				-1.7
3,635,401	+				+0.1
3,635,766	+				+1.1
3,635,782	+				-0.4
3,635,782	+				+2.5
3,635,785	-				+0.4
3,635,790	-				+0.5
3,635,887	+				-0.5
3,635,892	+				-1.3
3,635,898	-				-1.0
3,635,970	-		SO3488	0.16	-0.0
3,636,105	+		SO3488	0.33	+0.2
3,636,110	+		SO3488	0.34	+1.8
3,636,196	+		SO3488	0.45	-0.5
3,636,204	-		SO3488	0.46	-1.9
3,636,219	+		SO3488	0.48	+1.7
3,636,242	-		SO3488	0.51	+0.7
3,636,335	+		SO3488	0.63	-0.5
3,636,517	-		SO3488	0.87	+1.2
3,636,517	-		SO3488	0.87	+0.6
3,636,579	+				-0.9
3,636,648	-				-2.2
3,636,752	-				+1.0
3,636,837	+				-1.3
3,636,845	-				-0.9
3,636,911	-		SO3489	0.12	-1.0
3,636,969	+		SO3489	0.19	-0.3
3,637,117	+		SO3489	0.34	+0.9
3,637,117	+		SO3489	0.34	+0.7
3,637,125	-		SO3489	0.35	-1.1
3,637,285	+		SO3489	0.52	-0.1
3,637,295	+		SO3489	0.53	-0.6
3,637,300	+		SO3489	0.54	-1.9
3,637,332	-		SO3489	0.57	+1.2
3,637,370	+		SO3489	0.61	+0.4
3,637,395	+		SO3489	0.64	-0.6
3,637,400	+		SO3489	0.64	-0.1
3,637,400	+		SO3489	0.64	+1.9
3,637,441	-		SO3489	0.69	-0.8
3,637,471	+		SO3489	0.72	-0.3
3,637,525	+		SO3489	0.78	-1.3
3,637,525	+		SO3489	0.78	+0.9
3,637,533	-		SO3489	0.79	+0.1
3,637,533	-		SO3489	0.79	+1.0
3,637,533	-		SO3489	0.79	-0.4