Strain Fitness in Shewanella oneidensis MR-1 around SO3467

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,612,327	+				-1.1
3,612,369	-				-1.1
3,612,374	+				+0.4
3,612,374	+				+1.2
3,612,382	-				+0.9
3,612,382	-				-0.8
3,612,452	+	ribBA	SO3467	0.10	+1.3
3,612,457	+	ribBA	SO3467	0.11	-0.4
3,612,465	-	ribBA	SO3467	0.12	+0.7
3,612,465	-	ribBA	SO3467	0.12	-0.6
3,612,500	+	ribBA	SO3467	0.15	+2.0
3,612,508	-	ribBA	SO3467	0.15	+0.3
3,612,590	+	ribBA	SO3467	0.23	-1.2
3,612,590	+	ribBA	SO3467	0.23	+0.5
3,612,675	-	ribBA	SO3467	0.31	-1.3
3,612,733	-	ribBA	SO3467	0.36	+1.2
3,612,760	+	ribBA	SO3467	0.38	+1.0
3,612,760	+	ribBA	SO3467	0.38	+0.9
3,612,768	-	ribBA	SO3467	0.39	+0.4
3,612,768	-	ribBA	SO3467	0.39	-0.6
3,612,923	+	ribBA	SO3467	0.53	+0.9
3,612,970	+	ribBA	SO3467	0.57	+1.2
3,612,970	+	ribBA	SO3467	0.57	-0.2
3,612,978	-	ribBA	SO3467	0.58	+0.5
3,612,979	+	ribBA	SO3467	0.58	-1.1
3,612,987	-	ribBA	SO3467	0.59	+0.9
3,612,989	+	ribBA	SO3467	0.59	-0.6
3,612,989	+	ribBA	SO3467	0.59	+0.2
3,613,018	-	ribBA	SO3467	0.62	+1.6
3,613,018	-	ribBA	SO3467	0.62	-0.5
3,613,025	+	ribBA	SO3467	0.62	-1.5
3,613,025	+	ribBA	SO3467	0.62	+1.2
3,613,033	-	ribBA	SO3467	0.63	-2.1
3,613,061	+	ribBA	SO3467	0.65	-0.2
3,613,415	+				+0.5
3,613,420	+				-0.6
3,613,420	+				+0.3
3,613,420	+				-1.2
3,613,420	+				-1.6
3,613,420	+				+1.7
3,613,420	+				+1.4
3,613,428	-				+0.2
3,613,428	-				-0.4
3,613,428	-				+0.6
3,613,428	-				+0.1
3,613,428	-				+0.8
3,613,428	-				+2.1
3,613,428	-				+2.3
3,613,428	-				-2.3
3,613,428	-				+1.7
3,613,433	-				+0.9
3,613,438	-				-0.1
3,613,484	-				+2.1
3,613,503	+				-0.6
3,613,513	-				-0.5
3,613,671	+	ribE-2	SO3468	0.25	-2.2
3,613,775	+	ribE-2	SO3468	0.41	+1.1
3,613,834	+	ribE-2	SO3468	0.50	-0.4
3,613,878	-	ribE-2	SO3468	0.56	-2.0
3,613,878	-	ribE-2	SO3468	0.56	-0.3
3,613,878	-	ribE-2	SO3468	0.56	-0.3
3,613,878	-	ribE-2	SO3468	0.56	-0.5
3,614,003	+	ribE-2	SO3468	0.75	-2.1
3,614,020	+	ribE-2	SO3468	0.78	-0.8
3,614,028	-	ribE-2	SO3468	0.79	-1.9
3,614,129	-				+1.3