Strain Fitness in Shewanella oneidensis MR-1 around SO3464

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecN and pgpA are separated by 136 nucleotidespgpA and thiL overlap by 1 nucleotidesthiL and nusB are separated by 78 nucleotidesnusB and ribH are separated by 14 nucleotides SO3462: recN - DNA repair protein RecN (NCBI ptt file), at 3,607,978 to 3,609,636 recN SO3463: pgpA - phosphatidylglycerophosphatase A (NCBI ptt file), at 3,609,773 to 3,610,267 pgpA SO3464: thiL - thiamin-monophosphate kinase (NCBI ptt file), at 3,610,267 to 3,611,223 thiL SO3465: nusB - N utilization substance protein B (NCBI ptt file), at 3,611,302 to 3,611,706 nusB SO3466: ribH - riboflavin synthase, beta subunit (NCBI ptt file), at 3,611,721 to 3,612,197 ribH Position (kb) 3610 3611 3612Strain fitness (log2 ratio) -2 -1 0 1at 3609.396 kb on - strand, within recNat 3609.413 kb on + strand, within recNat 3609.413 kb on + strand, within recNat 3609.413 kb on + strand, within recNat 3609.421 kb on - strand, within recNat 3609.421 kb on - strand, within recNat 3609.998 kb on - strand, within pgpAat 3610.027 kb on - strand, within pgpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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3,609,396 - recN SO3462 0.85 +1.4
3,609,413 + recN SO3462 0.86 -0.5
3,609,413 + recN SO3462 0.86 -1.1
3,609,413 + recN SO3462 0.86 +0.6
3,609,421 - recN SO3462 0.87 -0.9
3,609,421 - recN SO3462 0.87 -2.6
3,609,998 - pgpA SO3463 0.45 -0.1
3,610,027 - pgpA SO3463 0.51 -0.1

Or see this region's nucleotide sequence