Strain Fitness in Shewanella oneidensis MR-1 around SO3456

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,599,494	+	relA	SO3455	0.63	-0.3
3,599,558	+	relA	SO3455	0.66	-1.8
3,599,558	-	relA	SO3455	0.66	+0.1
3,599,558	-	relA	SO3455	0.66	+1.1
3,599,558	-	relA	SO3455	0.66	+0.5
3,599,558	-	relA	SO3455	0.66	-1.2
3,599,559	-	relA	SO3455	0.66	-0.2
3,599,559	-	relA	SO3455	0.66	-0.3
3,599,559	-	relA	SO3455	0.66	-0.4
3,599,576	-	relA	SO3455	0.67	+0.1
3,599,682	-	relA	SO3455	0.72	-0.1
3,599,748	-	relA	SO3455	0.75	-0.1
3,599,869	+	relA	SO3455	0.80	-0.4
3,600,053	+	relA	SO3455	0.89	-0.0
3,600,222	-				-0.4
3,600,224	+				-0.7
3,600,277	-				+4.3
3,600,368	+				+1.8
3,600,444	-				-1.1
3,600,469	+				-0.8
3,600,469	+				-1.1
3,600,469	+				-1.2
3,600,477	-				-0.3
3,600,531	-				-1.5
3,600,660	+		SO3456	0.13	-1.8
3,600,701	+		SO3456	0.16	-0.5
3,600,777	+		SO3456	0.21	-0.8
3,600,778	+		SO3456	0.21	-1.9
3,600,830	+		SO3456	0.25	-1.7
3,600,902	+		SO3456	0.31	-1.0
3,600,910	-		SO3456	0.31	-0.8
3,600,944	+		SO3456	0.34	-1.9
3,600,947	-		SO3456	0.34	-3.2
3,600,949	+		SO3456	0.34	-0.8
3,600,949	+		SO3456	0.34	-0.2
3,600,949	+		SO3456	0.34	-0.5
3,600,957	-		SO3456	0.35	-2.0
3,600,957	-		SO3456	0.35	-1.6
3,600,991	+		SO3456	0.37	-1.7
3,600,996	+		SO3456	0.37	-2.9
3,601,004	-		SO3456	0.38	-1.2
3,601,070	+		SO3456	0.43	-0.7
3,601,078	-		SO3456	0.44	-2.1
3,601,174	-		SO3456	0.51	-2.5
3,601,307	+		SO3456	0.61	+0.5
3,601,355	-		SO3456	0.64	-0.5
3,601,382	-		SO3456	0.66	-2.8
3,601,461	-		SO3456	0.72	-0.8
3,601,483	-		SO3456	0.74	-3.2
3,601,740	-				-0.3
3,601,790	+				-0.6
3,601,798	-				-0.2
3,601,920	-				-0.3
3,601,939	+				-0.6
3,601,939	+				-2.6
3,601,951	+				-1.0
3,602,091	+				-0.9
3,602,137	-				-2.0
3,602,137	-				-0.5
3,602,147	-				-0.3
3,602,213	-				-1.3
3,602,214	-				-1.2
3,602,342	+		SO_3457	0.14	-1.7
3,602,342	+		SO_3457	0.14	-1.0
3,602,342	+		SO_3457	0.14	-1.1
3,602,342	+		SO_3457	0.14	-1.4
3,602,342	+		SO_3457	0.14	+0.5
3,602,350	-		SO_3457	0.15	-1.5
3,602,350	-		SO_3457	0.15	-1.3
3,602,350	-		SO_3457	0.15	-1.6
3,602,350	-		SO_3457	0.15	-1.1
3,602,388	+		SO_3457	0.16	-0.3
3,602,492	-		SO_3457	0.20	-2.1
3,602,539	-		SO_3457	0.21	-1.8
3,602,550	-		SO_3457	0.22	-0.8
3,602,593	-		SO_3457	0.23	+1.1
3,602,758	-		SO_3457	0.29	-0.5
3,602,768	+		SO_3457	0.29	-0.9
3,602,776	-		SO_3457	0.30	+0.2
3,602,776	-		SO_3457	0.30	+0.5