Strain Fitness in Shewanella oneidensis MR-1 around SO3245

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,383,734	+	flgH	SO3243	0.74	-1.8
3,383,807	+	flgH	SO3243	0.85	+0.3
3,383,885	+				+0.5
3,383,921	+				-0.8
3,384,017	-	flgG	SO3244	0.12	-1.9
3,384,027	-	flgG	SO3244	0.13	-0.9
3,384,045	-	flgG	SO3244	0.16	-1.5
3,384,116	-	flgG	SO3244	0.25	-1.5
3,384,145	-	flgG	SO3244	0.28	-0.7
3,384,183	+	flgG	SO3244	0.33	-1.5
3,384,256	+	flgG	SO3244	0.42	-1.3
3,384,366	+	flgG	SO3244	0.56	+1.1
3,384,531	+	flgG	SO3244	0.77	+1.7
3,384,573	-	flgG	SO3244	0.83	-0.8
3,384,626	-	flgG	SO3244	0.89	-1.7
3,384,846	-	flgF	SO3245	0.17	-1.2
3,384,852	+	flgF	SO3245	0.18	-1.4
3,384,855	-	flgF	SO3245	0.18	-3.9
3,384,855	-	flgF	SO3245	0.18	-0.6
3,384,906	+	flgF	SO3245	0.25	-1.2
3,384,978	+	flgF	SO3245	0.35	-0.1
3,384,987	-	flgF	SO3245	0.36	-0.6
3,385,020	-	flgF	SO3245	0.40	-1.3
3,385,164	+	flgF	SO3245	0.60	-1.7
3,385,164	+	flgF	SO3245	0.60	-1.5
3,385,172	-	flgF	SO3245	0.61	-0.9
3,385,226	+	flgF	SO3245	0.68	-1.6
3,385,226	+	flgF	SO3245	0.68	-1.7
3,385,226	+	flgF	SO3245	0.68	-1.8
3,385,226	+	flgF	SO3245	0.68	-0.3
3,385,234	-	flgF	SO3245	0.69	-1.4
3,385,372	+	flgF	SO3245	0.88	-0.6
3,385,432	-				-2.0
3,385,587	+				-0.6
3,385,595	-				-0.3
3,385,677	+				-1.0
3,385,783	-	flgE	SO3247	0.11	+0.6
3,385,807	-	flgE	SO3247	0.13	-1.8
3,385,807	-	flgE	SO3247	0.13	-0.9
3,385,807	-	flgE	SO3247	0.13	-3.1
3,385,867	+	flgE	SO3247	0.17	-3.0
3,385,948	+	flgE	SO3247	0.23	-1.2
3,385,956	-	flgE	SO3247	0.23	-0.3
3,386,005	-	flgE	SO3247	0.27	-0.4
3,386,147	+	flgE	SO3247	0.38	+0.0
3,386,155	-	flgE	SO3247	0.38	-1.5
3,386,182	+	flgE	SO3247	0.40	-2.0
3,386,190	-	flgE	SO3247	0.41	-1.5
3,386,212	+	flgE	SO3247	0.42	-0.5
3,386,212	+	flgE	SO3247	0.42	+0.8
3,386,220	-	flgE	SO3247	0.43	+0.0
3,386,245	-	flgE	SO3247	0.45	+0.5
3,386,249	+	flgE	SO3247	0.45	+0.1
3,386,319	+	flgE	SO3247	0.50	-0.7
3,386,351	-	flgE	SO3247	0.52	-1.3
3,386,393	-	flgE	SO3247	0.56	-2.4
3,386,439	-	flgE	SO3247	0.59	+0.2