Strain Fitness in Shewanella oneidensis MR-1 around SO3239

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,376,846	+				+1.3
3,376,846	+				+0.1
3,376,846	+				+0.1
3,376,846	+				-0.5
3,376,846	+				+0.7
3,376,846	+				+0.0
3,376,846	+				-1.5
3,376,846	+				-0.2
3,376,846	+				+0.3
3,376,846	+				-0.6
3,376,846	+				-0.1
3,376,846	+				-1.4
3,376,846	+				-0.1
3,376,846	+				+0.6
3,376,846	+				+0.2
3,376,846	+				-1.6
3,376,846	+				+0.8
3,376,846	+				+0.3
3,376,846	+				+0.2
3,376,846	+				-2.3
3,376,854	-				+0.1
3,376,854	-				-1.6
3,376,854	-				-0.4
3,376,854	-				-1.3
3,376,854	-				+0.6
3,376,854	-				-0.8
3,376,854	-				-1.0
3,376,854	-				-0.7
3,376,854	-				-0.7
3,376,854	-				+0.4
3,376,854	-				-1.7
3,376,854	-				-1.3
3,376,854	-				+0.3
3,376,854	-				+0.9
3,376,854	-				+0.2
3,376,854	-				-0.0
3,376,854	-				+0.1
3,376,854	-				+1.4
3,376,854	-				-0.3
3,376,854	-				+0.9
3,376,854	-				+0.6
3,376,854	-				+2.7
3,376,858	+				+0.5
3,376,858	+				-0.2
3,376,858	+				-1.6
3,376,866	-				-0.3
3,376,866	-				-1.9
3,377,040	+		SO3238	0.23	+0.3
3,377,295	+		SO3238	0.54	-1.3
3,377,313	-		SO3238	0.56	+0.7
3,377,399	+		SO3238	0.66	+0.1
3,377,506	-		SO3238	0.79	+0.1
3,377,556	-		SO3238	0.85	-0.6
3,377,573	+		SO3238	0.87	+0.9
3,377,578	+		SO3238	0.88	+0.4
3,377,674	-				+0.2
3,377,716	-				+0.8
3,377,751	+				-1.0
3,377,751	+				+2.1
3,377,758	-				-0.9
3,377,759	-				+0.9
3,377,789	+				-0.6
3,377,789	+				-2.1
3,377,825	-				+0.0
3,377,871	+				-0.1
3,377,885	-				-0.8
3,378,165	-	flgL	SO3239	0.32	-3.2
3,378,170	-	flgL	SO3239	0.33	-0.7
3,378,626	+	flgL	SO3239	0.70	-1.7
3,378,822	-	flgL	SO3239	0.87	-0.7
3,378,846	+	flgL	SO3239	0.89	-0.0
3,378,858	-	flgL	SO3239	0.90	-1.2
3,378,889	+				+0.8
3,378,970	+				-0.9
3,378,978	-				-1.6
3,379,178	+		SO_3240	0.62	-0.2
3,379,222	+		SO_3240	0.77	-0.8
3,379,230	-		SO_3240	0.80	-1.3
3,379,269	+				-1.4
3,379,455	+		SO3239.2	0.42	-0.3
3,379,476	-		SO3239.2	0.47	-0.2
3,379,565	+		SO3239.2	0.68	-1.8
3,379,619	+		SO3239.2	0.81	-2.0
3,379,619	+		SO3239.2	0.81	+0.2
3,379,639	-		SO3239.2	0.85	+1.8
3,379,641	-		SO3239.2	0.86	-1.5
3,379,747	-				-1.2
3,379,756	+				-1.9
3,379,968	+		SO3239.3	0.18	-0.2
3,379,982	+		SO3239.3	0.19	-0.7