Strain Fitness in Shewanella oneidensis MR-1 around SO3169

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3168 and SO3169 are separated by 194 nucleotidesSO3169 and SO3170 overlap by 4 nucleotides SO3168: SO3168 - DnaJ domain protein (NCBI ptt file), at 3,303,957 to 3,305,165 SO3168 SO3169: SO3169 - transcriptional regulator, Cro/CI family (NCBI ptt file), at 3,305,360 to 3,305,740 SO3169 SO3170: SO3170 - conserved hypothetical protein (NCBI ptt file), at 3,305,737 to 3,307,104 SO3170 Position (kb) 3305 3306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3304.496 kb on + strand, within SO3168at 3304.509 kb on + strand, within SO3168at 3304.511 kb on - strand, within SO3168at 3304.565 kb on - strand, within SO3168at 3304.575 kb on - strand, within SO3168at 3304.615 kb on + strand, within SO3168at 3304.620 kb on - strand, within SO3168at 3304.630 kb on + strand, within SO3168at 3304.638 kb on - strand, within SO3168at 3304.679 kb on + strand, within SO3168at 3304.679 kb on + strand, within SO3168at 3304.747 kb on + strand, within SO3168at 3304.753 kb on + strand, within SO3168at 3304.755 kb on - strand, within SO3168at 3304.798 kb on + strand, within SO3168at 3304.803 kb on + strand, within SO3168at 3304.806 kb on - strand, within SO3168at 3304.816 kb on - strand, within SO3168at 3304.820 kb on - strand, within SO3168at 3304.994 kb on - strand, within SO3168at 3305.135 kb on - strandat 3305.239 kb on + strandat 3305.261 kb on + strandat 3305.470 kb on - strand, within SO3169at 3305.688 kb on + strand, within SO3169at 3305.688 kb on + strand, within SO3169at 3305.881 kb on + strand, within SO3170at 3305.935 kb on + strand, within SO3170at 3305.947 kb on + strand, within SO3170at 3306.002 kb on + strand, within SO3170at 3306.002 kb on + strand, within SO3170at 3306.002 kb on + strand, within SO3170at 3306.010 kb on - strand, within SO3170at 3306.046 kb on + strand, within SO3170at 3306.488 kb on + strand, within SO3170at 3306.488 kb on + strand, within SO3170at 3306.488 kb on + strand, within SO3170at 3306.520 kb on - strand, within SO3170at 3306.617 kb on - strand, within SO3170at 3306.660 kb on - strand, within SO3170at 3306.697 kb on + strand, within SO3170at 3306.702 kb on + strand, within SO3170

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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3,304,496 + SO3168 0.45 +0.6
3,304,509 + SO3168 0.46 -1.0
3,304,511 - SO3168 0.46 +2.0
3,304,565 - SO3168 0.50 -0.1
3,304,575 - SO3168 0.51 -0.5
3,304,615 + SO3168 0.54 +2.3
3,304,620 - SO3168 0.55 +1.8
3,304,630 + SO3168 0.56 -0.5
3,304,638 - SO3168 0.56 +0.1
3,304,679 + SO3168 0.60 -0.2
3,304,679 + SO3168 0.60 -0.9
3,304,747 + SO3168 0.65 +0.6
3,304,753 + SO3168 0.66 +0.6
3,304,755 - SO3168 0.66 +1.2
3,304,798 + SO3168 0.70 -0.8
3,304,803 + SO3168 0.70 -1.9
3,304,806 - SO3168 0.70 +0.9
3,304,816 - SO3168 0.71 -0.6
3,304,820 - SO3168 0.71 +0.3
3,304,994 - SO3168 0.86 +1.6
3,305,135 - +0.6
3,305,239 + -3.3
3,305,261 + +0.4
3,305,470 - SO3169 0.29 -1.4
3,305,688 + SO3169 0.86 +0.6
3,305,688 + SO3169 0.86 -0.2
3,305,881 + SO3170 0.11 +0.4
3,305,935 + SO3170 0.14 +3.0
3,305,947 + SO3170 0.15 +1.8
3,306,002 + SO3170 0.19 +0.2
3,306,002 + SO3170 0.19 -0.4
3,306,002 + SO3170 0.19 +1.6
3,306,010 - SO3170 0.20 +2.0
3,306,046 + SO3170 0.23 -1.0
3,306,488 + SO3170 0.55 +0.5
3,306,488 + SO3170 0.55 -0.8
3,306,488 + SO3170 0.55 -0.4
3,306,520 - SO3170 0.57 -0.9
3,306,617 - SO3170 0.64 -0.8
3,306,660 - SO3170 0.67 +1.1
3,306,697 + SO3170 0.70 +0.3
3,306,702 + SO3170 0.71 +1.4

Or see this region's nucleotide sequence