Strain Fitness in Shewanella oneidensis MR-1 around SO3065
Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-1 |
---|---|---|---|---|---|
remove | |||||
3,181,235 | - | purF | SO3064 | 0.68 | -1.7 |
3,181,268 | + | purF | SO3064 | 0.70 | -0.9 |
3,181,330 | + | purF | SO3064 | 0.74 | -2.8 |
3,181,407 | - | purF | SO3064 | 0.79 | -1.0 |
3,181,554 | - | purF | SO3064 | 0.89 | -0.4 |
3,181,587 | + | +0.3 | |||
3,181,595 | - | -1.0 | |||
3,181,645 | - | -1.1 | |||
3,181,652 | - | -2.5 | |||
3,182,017 | + | SO3065 | 0.22 | -2.1 | |
3,182,025 | - | SO3065 | 0.24 | -0.6 | |
3,182,059 | + | SO3065 | 0.31 | +1.6 | |
3,182,420 | + | -0.9 | |||
3,182,428 | - | +1.0 | |||
3,182,448 | - | +0.0 | |||
3,182,590 | - | -0.5 | |||
3,182,638 | + | SO3066 | 0.15 | -0.4 | |
3,182,658 | + | SO3066 | 0.18 | +2.6 | |
3,182,658 | + | SO3066 | 0.18 | -0.9 | |
3,182,658 | + | SO3066 | 0.18 | +0.6 | |
3,182,666 | - | SO3066 | 0.19 | -1.3 | |
3,182,837 | - | SO3066 | 0.39 | +0.8 | |
3,182,975 | - | SO3066 | 0.55 | -0.6 | |
3,183,153 | - | SO3066 | 0.76 | +1.0 |
Or see this region's nucleotide sequence