Strain Fitness in Shewanella oneidensis MR-1 around SO3062

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,177,238	-	topB	SO3061	0.71	+1.5
3,177,307	+	topB	SO3061	0.74	-0.2
3,177,307	+	topB	SO3061	0.74	+0.5
3,177,427	+	topB	SO3061	0.80	-1.2
3,177,557	+	topB	SO3061	0.86	+1.4
3,177,567	-	topB	SO3061	0.87	+0.7
3,177,735	-				-0.4
3,177,903	-				+1.1
3,177,969	-				+0.5
3,178,041	-				-0.9
3,178,151	+		SO3062	0.36	-0.7
3,178,159	-		SO3062	0.39	+0.3
3,178,247	+		SO3062	0.69	-1.7
3,178,388	+				+0.1
3,178,411	+				-0.0
3,178,500	+				+0.5
3,178,531	+				+1.0
3,178,660	-				+0.3
3,178,818	+		SO3063	0.13	-0.2
3,178,818	+		SO3063	0.13	+0.3
3,178,831	-		SO3063	0.14	-1.2
3,178,956	+		SO3063	0.22	+0.3
3,178,962	+		SO3063	0.22	-1.3
3,179,004	+		SO3063	0.25	-0.9
3,179,103	+		SO3063	0.32	-0.6
3,179,160	-		SO3063	0.36	-0.4
3,179,261	+		SO3063	0.42	-0.2