Strain Fitness in Shewanella oneidensis MR-1 around SO3050

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,161,740	+		SO3048	0.86	-0.1
3,161,794	-		SO3048	0.89	+0.1
3,161,869	-				+2.6
3,161,925	-				+1.6
3,161,930	-				-0.1
3,161,937	+				+1.8
3,161,945	-				-1.2
3,161,974	+				+0.1
3,162,003	-				+0.2
3,162,081	+				-1.0
3,162,081	+				+1.3
3,162,314	+		SO3049	0.54	+1.1
3,162,322	-		SO3049	0.56	-1.3
3,162,343	+		SO3049	0.60	+1.5
3,162,371	-		SO3049	0.65	-0.9
3,162,371	-		SO3049	0.65	-1.5
3,162,383	+		SO3049	0.68	+1.9
3,162,391	-		SO3049	0.69	+0.4
3,162,391	-		SO3049	0.69	+0.4
3,162,484	+		SO3049	0.88	+0.8
3,162,492	-				-1.7
3,162,492	-				-1.0
3,162,492	-				-0.4
3,162,492	-				-0.7
3,162,492	-				-1.5
3,162,550	+				-0.6
3,162,556	-				-2.0
3,162,603	+				+2.0
3,162,611	-				-1.3
3,162,611	-				+1.0
3,162,611	-				-0.3
3,162,667	-		SO3050	0.18	-0.2
3,162,796	+		SO3050	0.36	-0.8
3,162,847	+		SO3050	0.44	-1.4
3,163,275	+				+0.2
3,163,478	-		SO3051	0.24	-1.5
3,163,507	+		SO3051	0.27	-0.1
3,163,590	-		SO3051	0.35	+0.2
3,163,653	-		SO3051	0.41	-1.4
3,163,675	-		SO3051	0.43	+0.5
3,163,713	+		SO3051	0.47	+0.7
3,163,820	+		SO3051	0.58	-0.5
3,163,820	+		SO3051	0.58	-1.0
3,163,820	+		SO3051	0.58	+1.8
3,163,849	+		SO3051	0.61	-0.6
3,164,007	+		SO3051	0.76	-0.1
3,164,040	+		SO3051	0.79	+0.8
3,164,081	-		SO3051	0.84	-1.9
3,164,170	+				+0.1
3,164,187	+				-0.5
3,164,213	-				+0.1