Strain Fitness in Shewanella oneidensis MR-1 around SO2934

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,068,125	-		SO_2933	0.19	+0.9
3,068,157	-		SO_2933	0.22	+0.3
3,068,200	+		SO_2933	0.26	+0.3
3,068,303	-		SO_2933	0.36	-0.2
3,068,412	-		SO_2933	0.47	-0.3
3,068,592	+		SO_2933	0.65	+0.3
3,068,698	+		SO_2933	0.75	+0.7
3,068,751	-		SO_2933	0.80	+0.1
3,068,751	-		SO_2933	0.80	+0.5
3,068,776	-		SO_2933	0.83	-0.7
3,068,831	-		SO_2933	0.88	+0.6
3,068,967	+				-1.0
3,068,975	-				-0.2
3,069,014	-				+2.2
3,069,014	-				-0.8
3,069,014	-				+0.9
3,069,014	-				+1.6
3,069,087	+				-0.1
3,069,162	-				+1.4
3,069,190	-				-0.5
3,069,287	+				-0.1
3,069,295	-				+1.0
3,069,307	-				+0.4
3,069,317	+		SO2934	0.10	-0.4
3,069,450	+		SO2934	0.16	-1.0
3,069,502	-		SO2934	0.18	-0.6
3,069,542	-		SO2934	0.19	-0.7
3,069,577	-		SO2934	0.21	-0.4
3,069,584	+		SO2934	0.21	-1.2
3,069,621	+		SO2934	0.22	+0.5
3,069,629	-		SO2934	0.23	+0.3
3,069,720	-		SO2934	0.26	-1.5
3,069,792	+		SO2934	0.29	+0.4
3,069,794	+		SO2934	0.29	+1.0
3,069,802	-		SO2934	0.30	-2.4
3,069,839	+		SO2934	0.31	-1.5
3,069,839	+		SO2934	0.31	+1.9
3,069,856	+		SO2934	0.32	-1.0
3,069,857	-		SO2934	0.32	+0.1
3,069,857	-		SO2934	0.32	+1.4
3,069,861	+		SO2934	0.32	+0.2
3,069,869	-		SO2934	0.32	+1.4
3,069,871	+		SO2934	0.32	-1.9
3,069,876	+		SO2934	0.33	-0.9
3,069,876	+		SO2934	0.33	-0.9
3,070,144	-		SO2934	0.43	-1.1
3,070,165	+		SO2934	0.44	-1.9
3,070,230	+		SO2934	0.47	-0.4
3,070,318	-		SO2934	0.50	+0.9
3,070,391	+		SO2934	0.53	-1.2
3,070,399	-		SO2934	0.54	+0.0
3,070,458	+		SO2934	0.56	-0.4
3,070,479	-		SO2934	0.57	+0.2
3,070,479	-		SO2934	0.57	-3.4
3,070,507	+		SO2934	0.58	+1.2
3,070,507	+		SO2934	0.58	-0.8
3,070,515	-		SO2934	0.58	+1.2
3,070,515	-		SO2934	0.58	-0.4
3,070,546	-		SO2934	0.60	-1.3
3,070,615	-		SO2934	0.62	-0.6
3,070,617	-		SO2934	0.63	+0.3
3,070,633	+		SO2934	0.63	-0.7
3,070,686	+		SO2934	0.65	-1.7
3,070,757	-		SO2934	0.68	-1.1
3,070,856	-		SO2934	0.72	-1.7
3,070,970	-		SO2934	0.77	+0.7
3,071,012	+		SO2934	0.78	+0.5
3,071,020	-		SO2934	0.79	-1.0
3,071,142	-		SO2934	0.84	+0.7
3,071,166	-		SO2934	0.85	-0.9
3,071,357	+				+0.2
3,071,364	+				+0.2
3,071,435	-				-1.0
3,071,451	+				-0.0
3,071,456	+				+0.6
3,071,459	-				-0.7
3,071,464	-				+0.3
3,071,508	+				+0.8
3,071,511	-				-0.4
3,071,516	-				-1.7
3,071,516	-				-0.7
3,071,605	-				-1.3
3,071,622	+				+0.2
3,071,764	+				-0.5
3,071,910	-		SO2935	0.14	+0.3
3,071,923	+		SO2935	0.16	-1.0
3,072,132	-		SO2935	0.44	-0.6
3,072,208	+		SO2935	0.54	+0.2
3,072,268	+		SO2935	0.62	-0.2
3,072,300	+		SO2935	0.67	+1.0
3,072,400	-		SO2935	0.80	-1.2