Strain Fitness in Shewanella oneidensis MR-1 around SO2858
Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-1 |
---|---|---|---|---|---|
remove | |||||
2,982,485 | - | SO2857 | 0.55 | +0.7 | |
2,982,511 | + | SO2857 | 0.57 | +0.2 | |
2,982,536 | + | SO2857 | 0.58 | +0.2 | |
2,982,600 | + | SO2857 | 0.62 | +1.0 | |
2,982,719 | + | SO2857 | 0.69 | -0.5 | |
2,982,719 | + | SO2857 | 0.69 | +0.0 | |
2,982,727 | - | SO2857 | 0.69 | +0.3 | |
2,982,727 | - | SO2857 | 0.69 | +1.4 | |
2,982,727 | - | SO2857 | 0.69 | -0.4 | |
2,982,822 | - | SO2857 | 0.74 | +0.4 | |
2,982,839 | + | SO2857 | 0.75 | +0.3 | |
2,982,847 | - | SO2857 | 0.76 | -0.7 | |
2,982,882 | - | SO2857 | 0.78 | -0.2 | |
2,982,882 | - | SO2857 | 0.78 | -1.6 | |
2,982,950 | - | SO2857 | 0.82 | -0.3 | |
2,983,079 | - | SO2857 | 0.89 | -2.5 | |
2,983,103 | + | -0.0 | |||
2,983,216 | + | -0.3 | |||
2,983,238 | - | +1.3 | |||
2,983,281 | - | +0.9 | |||
2,983,359 | - | SO2858 | 0.31 | -2.5 | |
2,983,477 | + | SO2858 | 0.75 | -1.5 | |
2,983,519 | - | +0.6 | |||
2,983,550 | + | -0.6 | |||
2,983,550 | + | -0.7 | |||
2,983,550 | + | -1.4 | |||
2,983,558 | - | -1.4 | |||
2,983,558 | - | -0.9 | |||
2,983,592 | + | -1.5 | |||
2,983,599 | + | -0.4 | |||
2,983,738 | - | +0.5 | |||
2,983,986 | - | -0.4 | |||
2,984,264 | + | +0.4 | |||
2,984,349 | - | +0.4 | |||
2,984,364 | - | +0.5 | |||
2,984,523 | - | -1.5 | |||
2,984,523 | - | +0.7 |
Or see this region's nucleotide sequence