Strain Fitness in Shewanella oneidensis MR-1 around SO2794

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,914,572	-	cdd	SO2791	0.88	+1.9
2,914,593	-				-0.8
2,914,739	-				+0.7
2,914,877	-				+0.6
2,914,936	+		SO2792	0.37	+0.4
2,914,939	+		SO2792	0.38	-2.1
2,915,005	+		SO2792	0.69	-0.9
2,915,025	+		SO2792	0.78	+0.9
2,915,038	-		SO2792	0.84	-1.6
2,915,051	-				-0.0
2,915,053	+				+2.7
2,915,056	-				+0.1
2,915,187	+		SO2793	0.41	-0.3
2,915,285	-		SO2793	0.69	-1.2
2,915,320	+		SO2793	0.79	-0.8
2,915,328	-		SO2793	0.81	+0.6
2,915,397	-				+1.4
2,915,464	-				-0.4
2,915,506	-				-0.5
2,915,562	+		SO2794	0.13	-2.5
2,915,562	+		SO2794	0.13	-0.6
2,915,570	-		SO2794	0.14	+0.3
2,915,663	+		SO2794	0.27	+0.6
2,915,733	-		SO2794	0.37	+0.3
2,915,813	+		SO2794	0.48	-1.3
2,915,980	-		SO2794	0.72	+2.7
2,916,002	+		SO2794	0.75	+0.5
2,916,010	-		SO2794	0.76	+0.5
2,916,091	+		SO2794	0.88	+1.8
2,916,101	+		SO2794	0.89	+1.4
2,916,101	+		SO2794	0.89	-0.2
2,916,106	+				-1.0
2,916,119	-				+0.7
2,916,125	-				-1.4
2,916,215	-				-1.3
2,916,240	-				-1.8
2,916,247	+				-0.7
2,916,247	+				-0.2
2,916,254	-				-1.3
2,916,255	-				-1.5
2,916,255	-				+0.7
2,916,255	-				-0.5
2,916,255	-				+1.4
2,916,255	-				+0.1
2,916,255	-				+1.4
2,916,343	+				-0.2
2,916,439	+				-0.3
2,916,526	+				+1.4
2,916,534	-				-0.7
2,916,541	-				+0.9
2,916,573	+		SO2795	0.12	-0.2
2,916,588	-		SO2795	0.15	-1.3
2,916,619	+		SO2795	0.24	+0.0
2,916,627	-		SO2795	0.26	-0.3
2,916,724	+		SO2795	0.51	-0.9
2,916,897	+				+0.7
2,916,912	-				+0.6
2,916,912	-				-0.6
2,916,940	-				-0.3
2,917,090	-				+0.6