Strain Fitness in Shewanella oneidensis MR-1 around SO2714

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,831,325	-				+1.2
2,831,325	-				+0.4
2,831,325	-				-0.6
2,831,325	-				+2.7
2,831,503	+				+0.7
2,831,503	+				+0.4
2,831,511	-				-1.1
2,831,756	-		SO2713	0.45	-0.4
2,831,756	-		SO2713	0.45	-0.7
2,831,777	-		SO2713	0.48	+2.7
2,831,825	+		SO2713	0.55	+2.7
2,831,833	+		SO2713	0.56	+2.7
2,831,833	-		SO2713	0.56	+1.7
2,831,833	-		SO2713	0.56	+0.7
2,831,947	+		SO2713	0.74	+1.2
2,831,955	-		SO2713	0.75	+0.7
2,832,091	-				+0.4
2,832,132	-				-1.1
2,832,178	+				+2.7
2,832,186	-				-1.2
2,832,196	-				+1.4
2,832,228	+				-0.3
2,832,250	+				+2.7
2,832,332	+		SO2714	0.36	+0.7
2,832,357	-		SO2714	0.45	-2.1
2,832,564	+				-0.8
2,832,581	-				+2.3
2,832,778	+				-1.1
2,832,911	-		SO2715	0.14	+2.1
2,833,350	-		SO2715	0.34	-0.4
2,833,350	-		SO2715	0.34	+1.9
2,833,368	+		SO2715	0.35	-0.3
2,833,370	+		SO2715	0.35	-1.5
2,833,370	+		SO2715	0.35	+0.4
2,833,467	-		SO2715	0.39	-0.2