Strain Fitness in Shewanella oneidensis MR-1 around SO2516

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,641,907	+	nth	SO2514	0.25	-1.5
2,642,007	-	nth	SO2514	0.40	-1.3
2,642,146	+	nth	SO2514	0.59	-1.5
2,642,259	-	nth	SO2514	0.76	+0.3
2,642,272	-	nth	SO2514	0.78	+0.0
2,642,366	+				-0.6
2,642,366	+				-0.8
2,642,439	-				-0.7
2,642,791	-		SO2516	0.33	-2.0
2,642,976	-				+1.1
2,643,020	-				-1.2
2,643,053	-				+2.1
2,643,063	-				-1.1
2,643,070	-				-0.3
2,643,155	+		SO2517	0.12	+0.2
2,643,338	-				+0.7
2,643,359	+		SO2517	0.34	-1.3
2,643,366	+		SO2517	0.34	+0.0
2,643,367	-		SO2517	0.34	-0.8
2,643,496	+		SO2517	0.48	+0.2
2,643,504	-		SO2517	0.49	+1.0
2,643,504	-		SO2517	0.49	+0.6
2,643,508	+		SO2517	0.50	-0.8
2,643,508	+		SO2517	0.50	+1.1
2,643,516	-		SO2517	0.50	+1.3
2,643,516	-		SO2517	0.50	+0.9
2,643,526	-		SO2517	0.52	+1.8
2,643,546	+		SO2517	0.54	-2.1
2,643,546	+		SO2517	0.54	-1.1
2,643,554	-		SO2517	0.55	-0.1
2,643,590	-		SO2517	0.58	-2.5
2,643,879	-		SO2517	0.90	-1.2