Strain Fitness in Shewanella oneidensis MR-1 around SO2479

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2477 and kdsB are separated by 82 nucleotideskdsB and SO2479 are separated by 28 nucleotidesSO2479 and SO2480 are separated by 715 nucleotides SO2477: SO2477 - alcohol dehydrogenase, iron-containing (NCBI ptt file), at 2,598,203 to 2,599,273 SO2477 SO2478: kdsB - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 2,599,356 to 2,600,093 kdsB SO2479: SO2479 - hypothetical protein (NCBI ptt file), at 2,600,122 to 2,600,358 SO2479 SO2480: SO2480 - hypothetical protein (NCBI ptt file), at 2,601,074 to 2,602,108 SO2480 Position (kb) 2600 2601Strain fitness (log2 ratio) -2 -1 0 1at 2600.170 kb on + strand, within SO2479at 2600.250 kb on + strand, within SO2479at 2600.319 kb on + strand, within SO2479at 2600.512 kb on - strandat 2600.534 kb on + strandat 2600.544 kb on + strandat 2601.043 kb on - strandat 2601.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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2,600,170 + SO2479 0.20 -2.4
2,600,250 + SO2479 0.54 +0.0
2,600,319 + SO2479 0.83 -0.3
2,600,512 - +1.4
2,600,534 + -0.3
2,600,544 + +0.8
2,601,043 - +0.0
2,601,068 - +0.7

Or see this region's nucleotide sequence