Strain Fitness in Shewanella oneidensis MR-1 around SO2444

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,556,483	+	thiF	SO2443	0.47	-0.5
2,556,680	+	thiF	SO2443	0.69	-0.6
2,556,680	+	thiF	SO2443	0.69	-1.0
2,556,680	+	thiF	SO2443	0.69	+0.1
2,556,738	+	thiF	SO2443	0.75	-0.7
2,556,738	+	thiF	SO2443	0.75	+1.4
2,556,918	-				+0.5
2,556,971	-				+0.4
2,557,138	-	thiDE	SO2444	0.11	-0.1
2,557,138	-	thiDE	SO2444	0.11	-1.5
2,557,214	-	thiDE	SO2444	0.16	+0.3
2,557,280	+	thiDE	SO2444	0.20	-0.2
2,557,413	-	thiDE	SO2444	0.29	-0.3
2,557,483	+	thiDE	SO2444	0.33	-2.0
2,557,552	+	thiDE	SO2444	0.38	+1.2
2,557,555	-	thiDE	SO2444	0.38	-0.5
2,557,676	+	thiDE	SO2444	0.45	+0.4
2,557,690	+	thiDE	SO2444	0.46	-1.4
2,557,723	+	thiDE	SO2444	0.48	-0.7
2,557,729	+	thiDE	SO2444	0.49	-0.1
2,557,742	+	thiDE	SO2444	0.50	+0.2
2,557,760	-	thiDE	SO2444	0.51	-1.2
2,557,770	+	thiDE	SO2444	0.51	-0.6
2,557,778	-	thiDE	SO2444	0.52	-0.1
2,557,782	+	thiDE	SO2444	0.52	+1.3
2,557,790	-	thiDE	SO2444	0.53	+0.1
2,557,794	+	thiDE	SO2444	0.53	+1.4
2,557,874	+	thiDE	SO2444	0.58	+0.1
2,557,874	+	thiDE	SO2444	0.58	-0.7
2,558,275	-	thiDE	SO2444	0.83	+2.8
2,558,316	-	thiDE	SO2444	0.86	-1.6
2,558,535	+				+0.3
2,558,543	-				-0.2
2,558,580	+				-0.9
2,558,613	+				-0.3
2,558,615	-				+0.2
2,558,863	-	thiC	SO2445	0.15	-0.5
2,558,898	-	thiC	SO2445	0.17	-0.7
2,558,905	-	thiC	SO2445	0.17	+0.1
2,559,185	+	thiC	SO2445	0.30	-1.4
2,559,193	-	thiC	SO2445	0.30	+0.6
2,559,193	-	thiC	SO2445	0.30	+0.1
2,559,278	-	thiC	SO2445	0.34	-1.8
2,559,302	-	thiC	SO2445	0.35	-0.0
2,559,362	+	thiC	SO2445	0.38	-2.4
2,559,408	+	thiC	SO2445	0.40	+0.3