Strain Fitness in Shewanella oneidensis MR-1 around SO2435

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,545,595	-		SO2434	0.74	+0.1
2,545,597	+		SO2434	0.74	+0.5
2,545,871	+		SO2434	0.83	+0.1
2,545,890	-		SO2434	0.84	+0.7
2,545,938	+		SO2434	0.86	-0.9
2,545,982	+		SO2434	0.87	-0.8
2,545,982	+		SO2434	0.87	-0.5
2,546,107	+				-0.3
2,546,107	+				-2.0
2,546,125	-				-0.5
2,546,135	+				-1.4
2,546,135	+				+0.9
2,546,135	+				+0.3
2,546,143	-				+0.1
2,546,143	-				-0.8
2,546,230	+				-1.3
2,546,257	+				-1.0
2,546,266	+				+1.4
2,546,269	-				-0.9
2,546,294	-				+0.2
2,546,304	-				-1.0
2,546,352	-				+1.8
2,546,595	+		SO2435	0.15	-0.6
2,546,654	+		SO2435	0.23	-2.1
2,546,813	+		SO2435	0.45	-1.4
2,546,869	+		SO2435	0.52	-1.9
2,546,869	+		SO2435	0.52	-0.3
2,546,884	+		SO2435	0.54	-0.1
2,547,153	+				-2.5
2,547,155	-				-2.3
2,547,161	-				-2.1
2,547,164	+				-0.8
2,547,747	-		SO2436	0.54	-1.0
2,547,779	+		SO2436	0.57	-0.9
2,547,787	-		SO2436	0.58	-1.6
2,547,986	+		SO2436	0.78	-0.2
2,548,027	-		SO2436	0.82	-1.2
2,548,076	-		SO2436	0.87	-0.3
2,548,204	-				+1.2