Strain Fitness in Shewanella oneidensis MR-1 around SO2427

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,533,920	-				-0.7
2,534,387	+		SO2426	0.68	+2.4
2,534,473	-		SO2426	0.80	-0.2
2,534,516	+		SO2426	0.86	-0.8
2,534,516	+		SO2426	0.86	-2.2
2,534,688	-				+0.9
2,534,853	-				-0.9
2,534,853	-				-1.4
2,535,034	-				+0.8
2,535,038	+		SO2427	0.10	-0.6
2,535,075	+		SO2427	0.11	-0.7
2,535,231	+		SO2427	0.18	+2.6
2,535,269	-		SO2427	0.19	-1.5
2,535,334	+		SO2427	0.22	-0.8
2,535,376	-		SO2427	0.23	-0.2
2,535,436	-		SO2427	0.26	-0.7
2,535,484	+		SO2427	0.27	-0.5
2,535,486	+		SO2427	0.28	-1.2
2,535,492	-		SO2427	0.28	-0.7
2,535,492	-		SO2427	0.28	-2.0
2,535,492	-		SO2427	0.28	-0.8
2,535,507	+		SO2427	0.28	-1.3
2,535,728	-		SO2427	0.37	+0.7
2,535,739	+		SO2427	0.37	-1.3
2,535,739	+		SO2427	0.37	+2.6
2,535,739	+		SO2427	0.37	+3.1
2,535,819	-		SO2427	0.41	-1.5
2,535,911	-		SO2427	0.44	-0.5
2,535,935	-		SO2427	0.45	+0.5
2,536,129	+		SO2427	0.53	-0.6
2,536,187	+		SO2427	0.55	+0.7
2,536,195	-		SO2427	0.55	-2.8
2,536,273	+		SO2427	0.58	+0.2
2,536,320	+		SO2427	0.60	-1.8
2,536,331	+		SO2427	0.60	-1.2
2,536,448	-		SO2427	0.65	-0.5
2,536,636	+		SO2427	0.72	-1.3
2,536,644	-		SO2427	0.73	-1.2
2,537,036	+		SO2427	0.88	-2.1
2,537,044	-		SO2427	0.88	-0.7
2,537,094	+				-1.9
2,537,122	-				-1.4
2,537,130	+				+0.2
2,537,130	+				-3.0
2,537,145	-				+0.2
2,537,170	+				+2.0
2,537,176	-				+0.2
2,537,211	-				-0.2
2,537,241	+				-2.6
2,537,249	-				-0.1
2,537,249	-				-1.5
2,537,274	+				+0.0
2,537,275	-				-1.3
2,537,354	+				+0.1
2,537,362	-				-0.3
2,537,362	-				-0.5
2,537,362	-				+0.6
2,537,405	+				+0.9
2,537,411	-				-1.9
2,537,411	-				-1.4
2,537,856	-				-1.7
2,537,918	-				+0.7
2,537,934	-				+0.5
2,538,001	+				-0.4
2,538,008	-				+1.1
2,538,067	+				+3.0
2,538,075	-				+0.7
2,538,075	-				-1.7
2,538,077	+				-0.6
2,538,177	-				+0.4