Strain Fitness in Shewanella oneidensis MR-1 around SO2424

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,531,632	-	ansA	SO2421	0.72	-1.4
2,531,969	+				+1.8
2,531,977	-				+1.1
2,531,977	-				+0.7
2,532,056	-		SO2422	0.24	+1.6
2,532,172	-		SO2422	0.66	+0.0
2,532,217	-		SO2422	0.82	+0.1
2,532,226	-		SO2422	0.85	+4.1
2,532,272	-				-1.5
2,532,272	-				+0.0
2,532,353	-		SO2423	0.28	+0.7
2,532,420	-		SO2423	0.49	+0.3
2,532,644	+				+1.3
2,532,759	-		SO2424	0.15	+0.8
2,532,837	+		SO2424	0.22	+0.8
2,532,845	-		SO2424	0.23	+0.2
2,532,845	-		SO2424	0.23	-0.2
2,532,869	+		SO2424	0.25	+0.5
2,532,896	+		SO2424	0.27	+1.5
2,533,001	+		SO2424	0.36	+3.8
2,533,001	+		SO2424	0.36	-0.3
2,533,009	-		SO2424	0.37	-1.5
2,533,193	-		SO2424	0.53	-1.7
2,533,226	+		SO2424	0.56	-1.9
2,533,351	+		SO2424	0.67	+1.8
2,533,388	+		SO2424	0.71	+1.6
2,533,529	-		SO2424	0.83	+2.3
2,533,564	-		SO2424	0.86	+1.9
2,533,747	+				-2.1
2,533,747	+				+0.0
2,533,755	-				-0.9
2,533,920	-				-0.7
2,534,387	+		SO2426	0.68	+2.4
2,534,473	-		SO2426	0.80	-0.2
2,534,516	+		SO2426	0.86	-0.8
2,534,516	+		SO2426	0.86	-2.2
2,534,688	-				+0.9