Strain Fitness in Shewanella oneidensis MR-1 around SO2407

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,510,064	+	aspC-2	SO2406	0.51	-0.6
2,510,178	-	aspC-2	SO2406	0.61	-0.6
2,510,275	+	aspC-2	SO2406	0.69	-2.3
2,510,275	+	aspC-2	SO2406	0.69	-0.2
2,510,275	+	aspC-2	SO2406	0.69	-1.5
2,510,301	-	aspC-2	SO2406	0.71	+0.9
2,510,370	+	aspC-2	SO2406	0.77	+0.8
2,510,378	-	aspC-2	SO2406	0.78	-0.3
2,510,388	-	aspC-2	SO2406	0.79	+0.0
2,510,562	+				-2.4
2,510,572	+				-1.0
2,510,580	-				-0.1
2,510,815	+				-0.6
2,511,087	+				+1.8
2,511,095	-				-1.0
2,511,136	+				-0.4
2,511,212	+		SO2407	0.11	-0.2
2,511,212	+		SO2407	0.11	-1.4
2,511,220	-		SO2407	0.11	-1.7
2,512,099	-		SO2407	0.68	-1.9
2,512,233	+		SO2407	0.76	+0.5
2,512,253	-		SO2407	0.78	+2.2
2,512,298	-		SO2407	0.80	-1.3
2,512,368	+		SO2407	0.85	-1.2
2,512,526	-				-0.1
2,512,824	-		SO2408	0.23	+0.7
2,512,852	+		SO2408	0.26	-0.5
2,512,898	-		SO2408	0.32	-2.3
2,512,962	+		SO2408	0.39	+0.9
2,512,967	+		SO2408	0.40	+0.8
2,513,135	-		SO2408	0.59	+1.4
2,513,135	-		SO2408	0.59	-0.8
2,513,170	-		SO2408	0.63	+1.8
2,513,295	-		SO2408	0.78	-0.1
2,513,441	-				-0.4
2,513,441	-				+0.0
2,513,489	+				+2.2
2,513,532	+				-1.0