Strain Fitness in Shewanella oneidensis MR-1 around SO2319

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,428,111	+		SO_2317	0.58	+1.3
2,428,160	-		SO_2317	0.62	-2.5
2,428,178	-		SO_2317	0.63	+0.0
2,428,308	-		SO_2317	0.74	+0.5
2,428,314	-		SO_2317	0.75	-0.3
2,428,443	-		SO_2317	0.86	-1.4
2,428,516	+				-0.7
2,428,721	-	cheY-2	SO2318	0.22	-1.1
2,428,721	-	cheY-2	SO2318	0.22	+0.2
2,428,721	-	cheY-2	SO2318	0.22	+1.0
2,428,798	+	cheY-2	SO2318	0.43	+0.4
2,428,801	-	cheY-2	SO2318	0.44	+1.9
2,428,801	-	cheY-2	SO2318	0.44	+0.5
2,428,872	+	cheY-2	SO2318	0.63	+0.4
2,428,892	-	cheY-2	SO2318	0.69	-1.1
2,429,088	+		SO2319	0.22	-0.9
2,429,268	+		SO2319	0.78	-1.6
2,429,268	+		SO2319	0.78	-0.3
2,429,303	-		SO2319	0.89	-1.9
2,429,319	+				+0.5
2,429,327	-				+0.6
2,429,339	-				-1.6
2,429,409	+				+0.1
2,429,475	+		SO_2320	0.11	+0.2
2,429,522	+		SO_2320	0.14	-1.3
2,429,537	-		SO_2320	0.15	-0.7
2,429,622	-		SO_2320	0.22	+0.1
2,429,622	-		SO_2320	0.22	+0.3
2,429,740	+		SO_2320	0.31	-2.1
2,429,748	-		SO_2320	0.32	-1.0
2,429,753	+		SO_2320	0.32	-0.3
2,429,763	+		SO_2320	0.33	-0.6
2,429,763	+		SO_2320	0.33	+1.3
2,429,763	+		SO_2320	0.33	+0.7
2,429,768	+		SO_2320	0.33	-0.7
2,429,770	+		SO_2320	0.33	+1.8
2,429,795	-		SO_2320	0.35	+0.1
2,429,818	-		SO_2320	0.37	-1.7
2,429,860	-		SO_2320	0.40	+0.6
2,429,896	-		SO_2320	0.43	-1.2
2,429,896	-		SO_2320	0.43	+1.4
2,429,944	-		SO_2320	0.47	-1.1
2,430,108	+		SO_2320	0.59	+0.2
2,430,144	-		SO_2320	0.62	+1.0
2,430,152	+		SO_2320	0.62	+1.3
2,430,154	+		SO_2320	0.63	-0.6