Strain Fitness in Shewanella oneidensis MR-1 around SO2103

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,199,888	-		SO2102	0.57	+0.1
2,199,947	+		SO2102	0.61	-1.9
2,199,947	+		SO2102	0.61	+0.6
2,199,947	+		SO2102	0.61	-0.4
2,199,955	-		SO2102	0.62	+0.9
2,199,955	-		SO2102	0.62	-0.2
2,200,092	-		SO2102	0.72	-1.2
2,200,112	+		SO2102	0.74	+2.0
2,200,168	+		SO2102	0.78	-0.6
2,200,283	+		SO2102	0.86	-0.4
2,200,284	+		SO2102	0.86	+0.4
2,200,292	-		SO2102	0.87	-0.3
2,200,292	-		SO2102	0.87	+0.2
2,200,292	-		SO2102	0.87	-0.3
2,200,530	-				-1.8
2,200,569	+				+0.4
2,200,613	+				+0.6
2,200,794	+				-0.8
2,200,884	+		SO2103	0.18	-0.9
2,201,034	+		SO2103	0.36	+0.8
2,201,042	-		SO2103	0.37	+0.4
2,201,168	+		SO2103	0.53	+0.8
2,201,178	+		SO2103	0.54	-0.2
2,201,179	+		SO2103	0.54	+0.6
2,201,229	+		SO2103	0.60	+1.5
2,201,421	-		SO2103	0.83	+0.3
2,201,582	-				+1.3
2,201,626	-				-1.5
2,201,762	-		SO2104	0.29	+0.6
2,201,762	-		SO2104	0.29	+0.0
2,201,762	-		SO2104	0.29	-0.2
2,201,873	+		SO2104	0.46	-0.0
2,201,881	-		SO2104	0.47	-0.0
2,201,881	-		SO2104	0.47	+0.1
2,201,974	-		SO2104	0.61	+2.1
2,201,987	-		SO2104	0.63	+0.1
2,202,070	+		SO2104	0.76	-1.4
2,202,070	+		SO2104	0.76	+1.5
2,202,078	-		SO2104	0.77	-0.7
2,202,078	-		SO2104	0.77	-0.8
2,202,115	+		SO2104	0.83	+0.3
2,202,117	+		SO2104	0.83	-1.9
2,202,197	+				+1.1
2,202,317	-				-1.1
2,202,375	-				-0.6
2,202,456	-		SO2105	0.10	-2.3
2,202,463	+		SO2105	0.11	+0.2
2,202,531	-		SO2105	0.16	-1.8
2,202,533	+		SO2105	0.16	+1.8