Strain Fitness in Shewanella oneidensis MR-1 around SO2101

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,197,834	+	hoxK	SO2099	0.85	-0.2
2,197,947	-				-1.5
2,197,954	+				+0.4
2,197,996	-				-0.5
2,198,261	-				+1.7
2,198,388	+				+0.2
2,198,388	+				+0.9
2,198,506	+		SO2100	0.32	-1.3
2,198,506	+		SO2100	0.32	+0.6
2,198,681	+		SO2100	0.70	+0.2
2,198,792	-				+1.8
2,198,823	-				+0.8
2,198,894	-		SO2101	0.31	-1.3
2,199,003	-		SO2101	0.80	-1.3
2,199,313	+		SO2102	0.14	+0.7
2,199,313	+		SO2102	0.14	-0.3
2,199,313	+		SO2102	0.14	-0.2
2,199,321	-		SO2102	0.15	+1.5
2,199,321	-		SO2102	0.15	-0.8
2,199,329	+		SO2102	0.15	+1.8
2,199,345	-		SO2102	0.17	+1.2
2,199,429	-		SO2102	0.23	+1.1
2,199,484	-		SO2102	0.27	+0.9
2,199,571	-		SO2102	0.33	-0.2
2,199,710	-		SO2102	0.44	-1.8
2,199,712	+		SO2102	0.44	+1.6
2,199,730	-		SO2102	0.45	+1.3
2,199,888	-		SO2102	0.57	+0.1
2,199,947	+		SO2102	0.61	-1.9
2,199,947	+		SO2102	0.61	+0.6
2,199,947	+		SO2102	0.61	-0.4
2,199,955	-		SO2102	0.62	+0.9
2,199,955	-		SO2102	0.62	-0.2