Strain Fitness in Shewanella oneidensis MR-1 around SO2090

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,185,166	+		SO2088	0.56	-2.1
2,185,359	+		SO2088	0.77	-2.6
2,185,719	+	hypA	SO2089	0.15	-0.1
2,185,769	-	hypA	SO2089	0.29	+0.0
2,185,871	-	hypA	SO2089	0.58	+1.1
2,185,900	+	hypA	SO2089	0.66	+0.4
2,186,151	+	hypE	SO2090	0.13	+0.3
2,186,267	+	hypE	SO2090	0.24	-2.0
2,186,274	-	hypE	SO2090	0.25	-0.6
2,186,454	+	hypE	SO2090	0.43	-0.2
2,186,631	-	hypE	SO2090	0.60	+1.4
2,186,788	+	hypE	SO2090	0.75	-1.5
2,186,788	+	hypE	SO2090	0.75	-1.8
2,186,863	-	hypE	SO2090	0.83	-1.6
2,186,869	+	hypE	SO2090	0.83	-0.3
2,186,920	+	hypE	SO2090	0.88	-0.2
2,187,035	+				-0.0
2,187,094	+				-2.1
2,187,094	+				-0.9
2,187,154	+	hypD	SO2091	0.11	+1.4
2,187,207	+	hypD	SO2091	0.15	+0.2
2,187,207	+	hypD	SO2091	0.15	-0.7
2,187,313	+	hypD	SO2091	0.25	+0.4
2,187,313	+	hypD	SO2091	0.25	-0.2
2,187,313	+				-0.8
2,187,313	+	hypD	SO2091	0.25	-1.4
2,187,537	-	hypD	SO2091	0.44	+0.7
2,187,557	+	hypD	SO2091	0.46	+0.1
2,187,566	+	hypD	SO2091	0.47	+0.5
2,187,595	-	hypD	SO2091	0.49	+0.5
2,187,718	+	hypD	SO2091	0.60	-0.8
2,187,780	+	hypD	SO2091	0.66	-0.1
2,187,880	+	hypD	SO2091	0.74	-0.1
2,187,880	+	hypD	SO2091	0.74	+0.9
2,187,903	+	hypD	SO2091	0.76	-1.4
2,187,949	+	hypD	SO2091	0.80	-0.6