Strain Fitness in Shewanella oneidensis MR-1 around SO1990

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,091,607	-	cheV-1	SO1989	0.25	-0.6
2,091,612	+	cheV-1	SO1989	0.25	+0.1
2,091,614	+	cheV-1	SO1989	0.25	+0.3
2,091,675	+	cheV-1	SO1989	0.32	-0.5
2,091,675	+	cheV-1	SO1989	0.32	-1.5
2,091,683	-	cheV-1	SO1989	0.33	+1.8
2,091,809	-	cheV-1	SO1989	0.46	+0.7
2,091,832	-	cheV-1	SO1989	0.48	+1.0
2,091,845	+	cheV-1	SO1989	0.50	-0.8
2,091,875	+	cheV-1	SO1989	0.53	+0.1
2,091,891	+	cheV-1	SO1989	0.55	-0.9
2,092,123	+	cheV-1	SO1989	0.79	+0.2
2,092,123	+	cheV-1	SO1989	0.79	+0.3
2,092,157	+	cheV-1	SO1989	0.83	-0.4
2,092,157	+	cheV-1	SO1989	0.83	+0.0
2,092,256	+				-0.2
2,092,274	+				-0.6
2,092,274	+				-0.7
2,092,274	+				-0.4
2,092,302	-				-0.8
2,092,368	+				+0.8
2,092,376	-				-1.0
2,092,378	-				-0.9
2,092,412	+				-1.7
2,092,444	-				+1.3
2,092,482	-				-0.2
2,092,501	+				+0.4
2,092,638	-		SO1990	0.20	-0.2
2,092,739	-		SO1990	0.36	-0.6
2,092,746	-		SO1990	0.37	+1.4
2,092,889	-		SO1990	0.59	-0.4
2,092,917	-		SO1990	0.63	+0.7
2,092,953	+		SO1990	0.69	-0.3
2,092,998	+		SO1990	0.76	+1.0
2,093,098	-				-0.5
2,093,201	+				-1.2
2,093,209	-				-1.0
2,093,379	+		SO1991	0.49	-3.0
2,093,456	-		SO1991	0.70	-0.8
2,093,478	-		SO1991	0.76	-2.1
2,093,580	+				+0.6
2,093,580	-				-1.4
2,093,607	+				-1.6
2,093,617	+				+0.5
2,093,625	-				-0.1
2,093,722	+				-0.0
2,093,724	+				+0.5
2,093,753	-				-0.3
2,094,012	-				-1.0
2,094,024	+				+1.4