Strain Fitness in Shewanella oneidensis MR-1 around SO1987

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,088,904	-		SO1985	0.71	+1.1
2,088,926	-		SO1985	0.74	-2.1
2,088,937	-		SO1985	0.75	-1.5
2,088,937	-		SO1985	0.75	+1.1
2,089,030	+		SO1985	0.89	+1.7
2,089,038	-				-0.7
2,089,065	-				-2.1
2,089,200	-		SO1986	0.15	+0.6
2,089,246	-		SO1986	0.22	-0.7
2,089,256	-		SO1986	0.23	-1.7
2,089,263	-		SO1986	0.25	-0.7
2,089,263	-		SO1986	0.25	-0.1
2,089,263	-		SO1986	0.25	-0.4
2,089,263	-		SO1986	0.25	+0.4
2,089,388	-		SO1986	0.43	+0.6
2,089,421	+		SO1986	0.48	-0.5
2,089,467	-		SO1986	0.55	+0.0
2,089,467	-		SO1986	0.55	-0.2
2,089,486	+		SO1986	0.58	+0.1
2,089,503	-		SO1986	0.60	+0.1
2,089,535	-		SO1986	0.65	-2.1
2,089,728	-				+0.1
2,089,788	+				-1.8
2,089,788	+				+0.7
2,089,796	-				-1.4
2,089,796	-				-2.5
2,089,932	+				-1.0
2,089,939	+				-2.4
2,089,958	-		SO1987	0.12	-0.1
2,090,152	+		SO1987	0.47	+1.4
2,090,152	+		SO1987	0.47	+0.6
2,090,152	+		SO1987	0.47	+0.6
2,090,160	-		SO1987	0.49	-0.6
2,090,161	-		SO1987	0.49	+2.0
2,090,300	-		SO1987	0.74	-0.6
2,090,305	+		SO1987	0.75	+0.3
2,090,305	+		SO1987	0.75	+1.3
2,090,305	+		SO1987	0.75	-1.2
2,090,305	-		SO1987	0.75	-1.6
2,090,313	-		SO1987	0.77	-1.7
2,090,313	-		SO1987	0.77	-0.1
2,090,313	-		SO1987	0.77	+0.1
2,090,315	+		SO1987	0.77	-0.8
2,090,315	+		SO1987	0.77	+2.5
2,090,315	+		SO1987	0.77	-0.3
2,090,315	+		SO1987	0.77	-0.3
2,090,315	+		SO1987	0.77	-2.4
2,090,315	+		SO1987	0.77	-1.1
2,090,315	+		SO1987	0.77	-1.2
2,090,323	-		SO1987	0.78	+0.5
2,090,323	-		SO1987	0.78	-0.2
2,090,323	-		SO1987	0.78	+0.8
2,090,323	-		SO1987	0.78	+3.1
2,090,323	-		SO1987	0.78	-2.0
2,090,323	-		SO1987	0.78	-0.4
2,090,323	-		SO1987	0.78	+0.5
2,090,388	+				-1.3
2,090,478	-				-0.5
2,090,502	+				+0.1
2,090,542	+				+0.6
2,090,550	-				+0.1
2,090,645	+		SO1988	0.17	-0.5
2,090,660	-		SO1988	0.20	+0.1
2,090,664	+		SO1988	0.20	-0.1
2,090,700	-		SO1988	0.26	-1.3
2,090,767	-		SO1988	0.37	-0.4
2,090,772	-		SO1988	0.38	-0.6
2,090,777	-		SO1988	0.39	-0.3
2,090,788	+		SO1988	0.41	-1.2
2,090,788	+		SO1988	0.41	+0.8
2,090,796	-		SO1988	0.42	-1.4
2,090,796	-		SO1988	0.42	-0.6
2,090,800	+		SO1988	0.43	+0.5
2,090,800	+		SO1988	0.43	-0.7
2,090,800	+		SO1988	0.43	+1.1
2,090,800	+		SO1988	0.43	+0.2
2,090,800	+		SO1988	0.43	-1.2
2,090,800	+		SO1988	0.43	+0.7
2,090,800	+		SO1988	0.43	-2.4
2,090,800	+		SO1988	0.43	+0.1
2,090,800	+		SO1988	0.43	+0.1
2,090,808	-		SO1988	0.44	-1.4
2,090,808	-		SO1988	0.44	+1.1
2,090,808	-		SO1988	0.44	-0.7
2,090,808	-		SO1988	0.44	-0.8
2,090,808	-		SO1988	0.44	+0.3
2,090,808	-		SO1988	0.44	-1.7
2,090,808	-		SO1988	0.44	+1.1
2,090,808	-		SO1988	0.44	-0.7
2,090,808	-		SO1988	0.44	-1.0
2,090,853	-		SO1988	0.51	-0.3
2,090,861	+		SO1988	0.53	+0.8
2,090,861	+		SO1988	0.53	+0.9
2,090,881	-		SO1988	0.56	+3.3
2,090,997	+		SO1988	0.75	+1.6
2,091,004	+		SO1988	0.76	+1.1
2,091,121	+				-1.2
2,091,121	+				+0.2
2,091,125	+				-0.9
2,091,146	+				+0.7
2,091,147	+				-1.0
2,091,155	-				-0.2
2,091,161	-				-0.4
2,091,170	-				-0.2
2,091,239	+				-0.1
2,091,328	+				-0.9
2,091,328	-				-1.1