Strain Fitness in Shewanella oneidensis MR-1 around SO1963

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,067,694	+		SO1962	0.18	-0.6
2,067,816	-		SO1962	0.29	-1.7
2,067,933	+		SO1962	0.41	+0.1
2,067,935	+		SO1962	0.41	+2.1
2,067,950	+		SO1962	0.42	+2.3
2,067,950	+		SO1962	0.42	-2.4
2,068,043	+		SO1962	0.51	+0.0
2,068,171	-		SO1962	0.63	-0.9
2,068,224	-		SO1962	0.69	+0.4
2,068,568	-				+0.6
2,068,704	+				-0.6
2,068,706	-				-0.9
2,068,726	-				-0.4
2,068,742	+				+0.9
2,068,750	-				-1.4
2,068,822	-		SO1963	0.13	-1.0
2,068,822	-		SO1963	0.13	-0.8
2,068,851	+		SO1963	0.16	-0.9
2,068,902	+		SO1963	0.20	+0.6
2,068,982	+		SO1963	0.27	+1.4
2,068,990	-		SO1963	0.27	-0.2
2,068,997	+		SO1963	0.28	+0.6
2,068,997	+		SO1963	0.28	+1.0
2,068,997	+		SO1963	0.28	-0.3
2,069,005	-		SO1963	0.29	-1.0
2,069,005	-		SO1963	0.29	+2.2
2,069,012	-		SO1963	0.29	+1.9
2,069,094	-		SO1963	0.36	+0.2
2,069,104	-		SO1963	0.37	+0.9
2,069,613	+		SO1963	0.81	+0.8
2,069,662	+		SO1963	0.85	-0.9
2,069,767	-				-0.4
2,069,864	+		SO1964	0.38	+1.1
2,069,864	+		SO1964	0.38	+1.3
2,069,864	+		SO1964	0.38	+2.5
2,069,866	+		SO1964	0.40	-1.0
2,069,866	+		SO1964	0.40	+2.1
2,069,874	-		SO1964	0.48	+1.6
2,069,874	-		SO1964	0.48	-0.5
2,069,874	-		SO1964	0.48	-0.1
2,069,874	-		SO1964	0.48	-2.4
2,069,874	-		SO1964	0.48	+0.2
2,069,874	-		SO1964	0.48	+1.8
2,069,876	+		SO1964	0.50	-0.5
2,069,906	-		SO1964	0.79	-0.1
2,069,996	+				+1.3
2,070,206	+		SO1965	0.17	-3.0
2,070,206	+		SO1965	0.17	-2.1
2,070,214	-		SO1965	0.18	-0.4
2,070,447	+		SO1965	0.43	+1.0
2,070,449	+		SO1965	0.44	+1.8
2,070,454	+		SO1965	0.44	+1.5
2,070,462	-		SO1965	0.45	-2.3
2,070,539	+		SO1965	0.53	+1.1
2,070,539	+		SO1965	0.53	-0.6
2,070,594	-		SO1965	0.59	-1.2
2,070,603	-		SO1965	0.60	-0.2
2,070,609	+		SO1965	0.61	-1.4
2,070,739	-		SO1965	0.75	+0.3
2,070,751	-		SO1965	0.77	-0.1