Strain Fitness in Shewanella oneidensis MR-1 around SO1897

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,994,261	+	pccB-1	SO1896	0.52	-1.5
1,994,269	-	pccB-1	SO1896	0.52	+0.8
1,994,269	-	pccB-1	SO1896	0.52	+0.1
1,994,469	+	pccB-1	SO1896	0.65	+0.7
1,994,472	-	pccB-1	SO1896	0.65	+0.4
1,994,477	-	pccB-1	SO1896	0.65	-0.0
1,994,503	+	pccB-1	SO1896	0.67	+1.1
1,994,927	-				+0.5
1,995,137	+				+0.2
1,995,142	+				-1.1
1,995,169	-				-1.3
1,995,204	-				-0.3
1,995,218	+				-0.1
1,995,218	+				+0.6
1,995,419	+	ivd	SO1897	0.23	-1.7
1,995,427	-	ivd	SO1897	0.24	-0.5
1,995,427	-	ivd	SO1897	0.24	-0.9
1,995,427	-	ivd	SO1897	0.24	-0.9
1,995,563	-	ivd	SO1897	0.35	-1.1
1,995,651	+	ivd	SO1897	0.43	-1.4
1,995,681	-	ivd	SO1897	0.45	+0.4
1,995,681	-	ivd	SO1897	0.45	-1.7
1,995,776	-	ivd	SO1897	0.54	-1.9
1,995,987	+	ivd	SO1897	0.72	-2.1
1,996,063	-	ivd	SO1897	0.78	-0.9
1,996,264	+				-1.0
1,996,299	+				+0.4
1,996,309	-				-0.8
1,996,534	-		SO1898	0.18	-0.4
1,996,599	+		SO1898	0.34	-1.8
1,996,599	+		SO1898	0.34	-0.6
1,996,599	+		SO1898	0.34	-1.9
1,996,599	+		SO1898	0.34	-0.0
1,996,607	-		SO1898	0.36	-0.4
1,996,622	-		SO1898	0.39	+0.5
1,996,622	-		SO1898	0.39	+0.3
1,996,668	-		SO1898	0.51	-1.0
1,996,693	+		SO1898	0.57	-0.5
1,996,693	+		SO1898	0.57	-2.8
1,996,717	+		SO1898	0.63	-1.0
1,996,723	-		SO1898	0.64	-2.3
1,996,774	-		SO1898	0.77	-0.4
1,996,873	-				+0.7
1,996,873	-				+0.2
1,997,057	+				-1.2
1,997,087	-				+0.5
1,997,087	-				+0.6
1,997,134	-				-0.1
1,997,134	-				+0.2
1,997,134	-				-0.6
1,997,138	+				+0.1
1,997,146	-				-0.2
1,997,146	-				-1.8
1,997,185	+				-0.5
1,997,193	-				-0.3
1,997,193	-				-0.2