Strain Fitness in Shewanella oneidensis MR-1 around SO1867

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,958,099	-				+0.4
1,958,106	-				-1.6
1,958,162	-				+0.8
1,958,163	+				+0.4
1,958,224	+		SO1866	0.15	-2.2
1,958,420	-		SO1866	0.39	+0.3
1,958,652	+		SO1866	0.66	-2.4
1,958,781	+		SO1866	0.82	+1.4
1,958,804	-		SO1866	0.85	+3.2
1,958,882	-				-0.8
1,958,900	+				+0.8
1,959,097	-		SO1867	0.11	+0.8
1,959,117	+		SO1867	0.14	-0.0
1,959,117	+		SO1867	0.14	+1.9
1,959,183	-		SO1867	0.24	-3.5
1,959,183	-		SO1867	0.24	+0.6
1,959,185	+		SO1867	0.24	+2.4
1,959,188	-		SO1867	0.25	-0.1
1,959,193	-		SO1867	0.25	-0.1
1,959,211	+		SO1867	0.28	-0.3
1,959,211	+		SO1867	0.28	+0.8
1,959,211	+		SO1867	0.28	+0.3
1,959,294	+		SO1867	0.40	-0.6
1,959,417	-		SO1867	0.59	+1.5
1,959,536	-		SO1867	0.77	-0.0
1,959,551	+		SO1867	0.79	+0.9
1,959,594	+		SO1867	0.85	+0.7
1,959,673	-				+1.4
1,959,673	-				+1.4
1,959,682	-				-0.1
1,959,754	-				-0.5
1,959,807	+				+0.7
1,959,815	-				-0.3
1,959,815	-				-0.5
1,959,815	-				-0.3
1,959,815	-				-0.6
1,959,815	-				-0.4
1,959,876	+				-0.2
1,959,885	-				-0.5
1,959,911	+				+1.0
1,959,911	+				+0.6
1,960,076	-		SO1868	0.26	-0.2
1,960,395	+		SO1868	0.64	-1.3
1,960,400	-		SO1868	0.64	+1.3
1,960,581	+		SO1868	0.86	-0.7
1,960,581	+		SO1868	0.86	-0.3
1,960,589	-		SO1868	0.87	+0.6
1,960,611	-		SO1868	0.90	-1.1