Strain Fitness in Shewanella oneidensis MR-1 around SO1811

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,899,756	-		SO1810	0.34	-1.2
1,900,005	+		SO1810	0.51	+0.5
1,900,034	+		SO1810	0.53	-0.9
1,900,042	-		SO1810	0.54	-0.4
1,900,042	-		SO1810	0.54	-0.3
1,900,219	+		SO1810	0.66	+0.6
1,900,503	-		SO1810	0.86	-1.0
1,900,528	-		SO1810	0.87	+1.2
1,900,533	-		SO1810	0.88	+0.2
1,900,557	-		SO1810	0.89	+0.4
1,900,558	+		SO1810	0.89	-0.5
1,900,652	+				-0.7
1,900,722	-				-1.6
1,900,859	+		SO1811	0.12	-1.3
1,901,055	-		SO1811	0.29	-0.5
1,901,086	-		SO1811	0.31	-1.4
1,901,123	-		SO1811	0.34	-1.5
1,901,218	+		SO1811	0.42	-1.8
1,901,218	+		SO1811	0.42	+0.3
1,901,218	+		SO1811	0.42	-0.9
1,901,276	+		SO1811	0.47	+0.3
1,901,538	+		SO1811	0.69	+0.7
1,901,559	-		SO1811	0.70	+1.7
1,901,560	-		SO1811	0.70	-0.1
1,901,616	+		SO1811	0.75	+0.5
1,901,679	+		SO1811	0.80	+0.3
1,901,701	-		SO1811	0.82	+0.2
1,901,706	+		SO1811	0.83	-0.4
1,902,066	-				+2.3
1,902,070	+				-0.5
1,902,331	+	mdeA	SO1812	0.11	+1.8
1,902,373	-	mdeA	SO1812	0.14	-0.3
1,902,373	-	mdeA	SO1812	0.14	+1.7
1,902,373	-	mdeA	SO1812	0.14	+1.1
1,902,407	-	mdeA	SO1812	0.17	-0.2
1,902,536	+	mdeA	SO1812	0.28	-0.0
1,902,536	+	mdeA	SO1812	0.28	+1.3
1,902,801	+	mdeA	SO1812	0.50	-0.3
1,902,820	-	mdeA	SO1812	0.52	+1.9
1,902,827	+	mdeA	SO1812	0.53	+2.0
1,902,887	-	mdeA	SO1812	0.58	+1.1