Strain Fitness in Shewanella oneidensis MR-1 around SO1681

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,767,267	-				+1.4
1,767,350	+				+0.5
1,767,358	-				+2.8
1,767,370	-				+2.9
1,767,461	+		SO1680	0.10	+1.6
1,767,475	-		SO1680	0.12	+3.2
1,767,572	+		SO1680	0.25	+1.8
1,767,600	+		SO1680	0.28	+1.8
1,767,600	+		SO1680	0.28	+1.4
1,767,600	+		SO1680	0.28	+0.6
1,767,608	-		SO1680	0.29	+2.8
1,767,627	-		SO1680	0.32	+2.8
1,767,640	+		SO1680	0.33	+1.9
1,767,655	-		SO1680	0.35	+2.4
1,767,715	-		SO1680	0.43	+2.2
1,767,718	+		SO1680	0.43	-1.8
1,767,718	+		SO1680	0.43	+2.3
1,767,723	+		SO1680	0.44	+1.9
1,767,792	+		SO1680	0.53	+1.2
1,767,795	-		SO1680	0.53	+3.2
1,767,837	+		SO1680	0.59	-1.5
1,767,845	-		SO1680	0.60	+2.1
1,767,845	-		SO1680	0.60	+2.5
1,768,106	-				+3.0
1,768,128	+				+0.6
1,768,184	+				+3.0
1,768,280	-		SO1681	0.11	+4.3
1,768,526	+		SO1681	0.32	+3.3
1,768,526	+		SO1681	0.32	+3.4
1,768,526	+		SO1681	0.32	+3.6
1,768,526	+		SO1681	0.32	+3.2
1,768,650	+		SO1681	0.43	+3.8
1,768,717	+		SO1681	0.49	+3.0
1,768,752	-		SO1681	0.52	+1.5
1,768,880	-		SO1681	0.63	+2.5
1,768,921	+		SO1681	0.66	+2.5
1,769,040	+		SO1681	0.77	+3.0
1,769,040	+		SO1681	0.77	+3.1
1,769,080	-		SO1681	0.80	+3.0
1,769,090	+		SO1681	0.81	+4.7
1,769,240	-				+2.7
1,769,242	+				+2.3
1,769,250	-				+3.0
1,769,276	-				+2.0
1,769,309	-				+2.0
1,769,340	-				-1.3
1,769,375	-				+2.3
1,769,392	+				+0.7
1,769,402	-				-0.9
1,769,438	-				-0.1
1,769,707	+	mmsB	SO1682	0.35	-2.2
1,769,726	+	mmsB	SO1682	0.37	+0.8
1,769,783	+	mmsB	SO1682	0.44	+0.5
1,769,835	-	mmsB	SO1682	0.49	+0.1
1,769,844	-	mmsB	SO1682	0.50	+1.2
1,769,895	-	mmsB	SO1682	0.56	+1.1
1,769,960	-	mmsB	SO1682	0.63	+0.8
1,769,981	-	mmsB	SO1682	0.65	-0.4
1,770,060	-	mmsB	SO1682	0.74	+2.8
1,770,106	-	mmsB	SO1682	0.79	+1.2