Strain Fitness in Shewanella oneidensis MR-1 around SO1678

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,763,517	+	atoB	SO1677	0.28	+0.8
1,763,599	-	atoB	SO1677	0.35	+1.0
1,763,599	-	atoB	SO1677	0.35	-0.4
1,763,611	-	atoB	SO1677	0.36	+0.9
1,763,623	-	atoB	SO1677	0.37	+0.3
1,763,763	-	atoB	SO1677	0.49	-0.7
1,763,767	+	atoB	SO1677	0.49	+0.3
1,763,814	+	atoB	SO1677	0.53	-0.1
1,763,817	-	atoB	SO1677	0.53	-0.3
1,763,854	+	atoB	SO1677	0.56	+0.2
1,764,074	-	atoB	SO1677	0.75	-0.0
1,764,131	-	atoB	SO1677	0.80	-0.2
1,764,149	+	atoB	SO1677	0.81	-0.0
1,764,275	+				-0.5
1,764,290	+				+0.5
1,764,298	-				-0.5
1,764,315	+				+0.8
1,764,315	+				-0.0
1,764,323	-				+1.6
1,764,323	-				+0.6
1,764,330	+				+0.2
1,764,361	-				-0.4
1,764,424	-				+0.8
1,764,429	-				+1.1
1,764,479	+				+1.4
1,764,479	+				-0.1
1,764,492	-				+0.8
1,764,656	-				+0.7
1,764,793	+	mmsA	SO1678	0.19	-0.1
1,765,069	-	mmsA	SO1678	0.37	+1.3
1,765,069	-	mmsA	SO1678	0.37	+0.6
1,765,448	-	mmsA	SO1678	0.63	-0.9
1,765,597	+	mmsA	SO1678	0.72	+0.0
1,765,597	+	mmsA	SO1678	0.72	+0.8
1,765,603	+	mmsA	SO1678	0.73	-0.4
1,765,605	-	mmsA	SO1678	0.73	+0.1
1,765,608	+	mmsA	SO1678	0.73	+0.9
1,765,622	+	mmsA	SO1678	0.74	+0.3
1,765,900	-				+0.4
1,766,163	-				+0.0
1,766,338	-		SO1679	0.14	+1.7
1,766,399	+		SO1679	0.20	+1.0
1,766,413	-		SO1679	0.21	+0.4
1,766,660	+		SO1679	0.42	-0.1
1,766,920	+		SO1679	0.65	+1.0
1,766,925	+		SO1679	0.65	+1.6
1,766,949	+		SO1679	0.67	+1.2