Strain Fitness in Shewanella oneidensis MR-1 around SO1589

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,663,202	-		SO1587	0.30	+0.5
1,663,299	+		SO1587	0.49	+1.4
1,663,660	+		SO1588	0.32	-2.0
1,663,719	-		SO1588	0.53	+1.5
1,663,792	-		SO1588	0.79	+2.4
1,663,817	-		SO1588	0.88	-0.2
1,663,845	+				+0.8
1,663,967	+				-0.3
1,663,987	+				-0.7
1,664,036	+				-0.1
1,664,044	-				-0.3
1,664,047	+				+0.1
1,664,079	+				+0.3
1,664,082	-				-1.6
1,664,087	+				-0.1
1,664,087	-				-0.9
1,664,171	+				+0.2
1,664,171	+				-1.0
1,664,179	-				-2.3
1,664,261	-		SO1589	0.15	-2.3
1,664,281	+		SO1589	0.17	+0.6
1,664,289	-		SO1589	0.18	+0.4
1,664,299	+		SO1589	0.20	-1.0
1,664,349	-		SO1589	0.26	-0.5
1,664,405	-		SO1589	0.33	-3.2
1,664,405	-		SO1589	0.33	-1.0
1,664,415	-		SO1589	0.34	+1.9
1,664,533	+		SO1589	0.49	-1.7
1,664,579	+		SO1589	0.54	-0.8
1,664,841	-		SO1589	0.87	-1.5
1,664,866	+				-0.8
1,664,866	+				+0.7
1,664,874	-				-0.9
1,664,879	-				-1.8
1,665,136	+		SO1590	0.16	+0.3
1,665,136	+		SO1590	0.16	-0.2
1,665,136	+		SO1590	0.16	-1.0
1,665,146	+		SO1590	0.18	-1.4
1,665,200	-		SO1590	0.31	+2.0
1,665,219	+		SO1590	0.35	+0.5
1,665,365	-		SO1590	0.70	+1.5
1,665,390	+		SO1590	0.76	+0.3