Strain Fitness in Shewanella oneidensis MR-1 around SO1531

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,605,414	-	pomB	SO1530	0.14	-2.6
1,605,569	+	pomB	SO1530	0.31	-1.3
1,605,579	+	pomB	SO1530	0.32	-0.4
1,605,614	+	pomB	SO1530	0.36	-1.7
1,605,622	-	pomB	SO1530	0.37	-1.1
1,605,933	-	pomB	SO1530	0.70	-0.2
1,606,045	-	pomB	SO1530	0.82	-0.5
1,606,233	-				-1.7
1,606,293	+				-0.2
1,606,293	+				-1.0
1,606,301	-				-1.5
1,606,321	-				-0.8
1,606,457	-				-1.1
1,606,457	-				-2.8
1,606,496	+				+0.5
1,606,575	+	thiI	SO1531	0.11	+0.2
1,606,596	+	thiI	SO1531	0.13	-1.5
1,606,642	+	thiI	SO1531	0.16	-3.9
1,606,642	+	thiI	SO1531	0.16	-2.6
1,606,651	+	thiI	SO1531	0.17	-1.9
1,606,798	-	thiI	SO1531	0.27	-2.6
1,606,813	-	thiI	SO1531	0.28	-1.6
1,606,837	+	thiI	SO1531	0.29	-1.1
1,606,898	-	thiI	SO1531	0.34	-3.1
1,606,915	+	thiI	SO1531	0.35	+0.3
1,606,980	-	thiI	SO1531	0.39	-1.6
1,606,984	+	thiI	SO1531	0.40	-0.7
1,607,193	-	thiI	SO1531	0.54	+0.5
1,607,225	+	thiI	SO1531	0.56	-2.6
1,607,302	+	thiI	SO1531	0.61	-0.7
1,607,320	-	thiI	SO1531	0.63	-2.1
1,607,320	-	thiI	SO1531	0.63	-2.8
1,607,321	+	thiI	SO1531	0.63	-3.6
1,607,411	-	thiI	SO1531	0.69	+1.1
1,607,427	+	thiI	SO1531	0.70	-0.7
1,607,435	-	thiI	SO1531	0.71	-2.4
1,607,484	+	thiI	SO1531	0.74	+0.5
1,607,484	+	thiI	SO1531	0.74	-1.5
1,607,492	-	thiI	SO1531	0.75	-2.7
1,607,498	-	thiI	SO1531	0.75	-4.0
1,607,688	+	thiI	SO1531	0.88	-1.2
1,607,796	-				-2.3
1,607,870	+				+1.4
1,607,914	+				+1.5
1,607,967	+				-0.5
1,608,030	-		SO1532	0.15	-1.8
1,608,126	-		SO1532	0.56	+0.6
1,608,154	+		SO1532	0.68	+0.4
1,608,242	-				-0.1
1,608,242	-				+1.4
1,608,286	-				-1.9
1,608,506	+		SO1533	0.11	-0.4
1,608,663	+		SO1533	0.28	-0.1
1,608,859	+		SO1533	0.50	-0.8
1,608,859	+		SO1533	0.50	-0.1
1,608,859	+		SO1533	0.50	-1.8