Strain Fitness in Shewanella oneidensis MR-1 around SO1524

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1523 and grpE are separated by 99 nucleotidesgrpE and dxs are separated by 117 nucleotides SO1523: SO1523 - conserved hypothetical protein (NCBI ptt file), at 1,599,467 to 1,600,345 SO1523 SO1524: grpE - heat shock protein GrpE (NCBI ptt file), at 1,600,445 to 1,601,065 grpE SO1525: dxs - deoxyxylulose-5-phosphate synthase (NCBI ptt file), at 1,601,183 to 1,603,051 dxs Position (kb) 1600 1601 1602Strain fitness (log2 ratio) -1 0 1 2at 1601.014 kb on + strandat 1601.066 kb on + strandat 1601.199 kb on + strandat 1601.207 kb on - strandat 1601.207 kb on - strandat 1601.207 kb on - strandat 1601.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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1,601,014 + +1.2
1,601,066 + -0.1
1,601,199 + +2.5
1,601,207 - +0.2
1,601,207 - +0.5
1,601,207 - +0.6
1,601,207 - -1.2

Or see this region's nucleotide sequence