Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1428 and dmaA-1 are separated by 19 nucleotides dmaA-1 and dmsB-1 are separated by 13 nucleotides dmsB-1 and SO1431 are separated by 57 nucleotides
SO1428: SO1428 - outer membrane protein (NCBI ptt file), at 1,489,180 to 1,491,168
SO1428
SO1429: dmaA-1 - anaerobic dimethyl sulfoxide reductase, A subunit (NCBI ptt file), at 1,491,188 to 1,493,698
dmaA-1
SO1430: dmsB-1 - anaerobic dimethyl sulfoxide reductase, B subunit (NCBI ptt file), at 1,493,712 to 1,494,386
dmsB-1
SO1431: SO1431 - conserved hypothetical protein (NCBI ptt file), at 1,494,444 to 1,495,109
SO1431
Position (kb) 1491
1492
1493
1494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1490.254 kb on + strand, within SO1428 at 1490.340 kb on + strand, within SO1428 at 1490.358 kb on + strand, within SO1428 at 1490.366 kb on - strand, within SO1428 at 1490.406 kb on + strand, within SO1428 at 1490.470 kb on + strand, within SO1428 at 1490.471 kb on + strand, within SO1428 at 1490.476 kb on + strand, within SO1428 at 1490.484 kb on - strand, within SO1428 at 1490.608 kb on - strand, within SO1428 at 1490.844 kb on - strand, within SO1428 at 1490.867 kb on + strand, within SO1428 at 1490.932 kb on - strand, within SO1428 at 1490.958 kb on - strand, within SO1428 at 1490.968 kb on - strand, within SO1428 at 1490.972 kb on + strand at 1490.980 kb on - strand at 1490.982 kb on - strand at 1490.996 kb on + strand at 1491.201 kb on - strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.446 kb on + strand, within dmaA-1 at 1491.447 kb on - strand, within dmaA-1 at 1491.469 kb on + strand, within dmaA-1 at 1491.504 kb on + strand, within dmaA-1 at 1491.504 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.645 kb on - strand, within dmaA-1 at 1491.645 kb on - strand, within dmaA-1 at 1491.740 kb on - strand, within dmaA-1 at 1491.836 kb on + strand, within dmaA-1 at 1491.872 kb on + strand, within dmaA-1 at 1491.940 kb on + strand, within dmaA-1 at 1491.940 kb on + strand, within dmaA-1 at 1491.979 kb on - strand, within dmaA-1 at 1492.051 kb on + strand, within dmaA-1 at 1492.051 kb on + strand, within dmaA-1 at 1492.192 kb on - strand, within dmaA-1 at 1492.262 kb on + strand, within dmaA-1 at 1492.360 kb on - strand, within dmaA-1 at 1492.360 kb on - strand, within dmaA-1 at 1492.374 kb on - strand, within dmaA-1 at 1492.458 kb on - strand, within dmaA-1 at 1492.469 kb on + strand, within dmaA-1 at 1492.484 kb on + strand, within dmaA-1 at 1492.484 kb on + strand, within dmaA-1 at 1492.484 kb on + strand, within dmaA-1 at 1492.492 kb on - strand, within dmaA-1 at 1492.599 kb on - strand, within dmaA-1 at 1492.601 kb on + strand, within dmaA-1 at 1492.601 kb on + strand, within dmaA-1 at 1492.681 kb on + strand, within dmaA-1 at 1492.692 kb on + strand, within dmaA-1 at 1492.719 kb on + strand, within dmaA-1 at 1492.727 kb on - strand, within dmaA-1 at 1492.876 kb on + strand, within dmaA-1 at 1492.983 kb on + strand, within dmaA-1 at 1493.078 kb on + strand, within dmaA-1 at 1493.086 kb on - strand, within dmaA-1 at 1493.124 kb on + strand, within dmaA-1 at 1493.175 kb on - strand, within dmaA-1 at 1493.247 kb on + strand, within dmaA-1 at 1493.343 kb on + strand, within dmaA-1 at 1493.343 kb on + strand, within dmaA-1 at 1493.370 kb on + strand, within dmaA-1 at 1493.423 kb on + strand, within dmaA-1 at 1493.431 kb on - strand, within dmaA-1 at 1493.505 kb on + strand at 1493.513 kb on - strand at 1493.551 kb on + strand at 1493.676 kb on - strand at 1493.692 kb on + strand at 1493.700 kb on - strand at 1493.700 kb on - strand at 1493.805 kb on + strand, within dmsB-1 at 1493.813 kb on - strand, within dmsB-1 at 1493.970 kb on - strand, within dmsB-1 at 1493.970 kb on - strand, within dmsB-1 at 1493.981 kb on + strand, within dmsB-1 at 1493.991 kb on + strand, within dmsB-1 at 1493.991 kb on + strand, within dmsB-1 at 1493.991 kb on + strand, within dmsB-1 at 1494.142 kb on + strand, within dmsB-1 at 1494.157 kb on + strand, within dmsB-1 at 1494.262 kb on + strand, within dmsB-1 at 1494.381 kb on - strand at 1494.495 kb on + strand at 1494.508 kb on + strand at 1494.515 kb on + strand, within SO1431 at 1494.523 kb on - strand, within SO1431 at 1494.595 kb on - strand, within SO1431 at 1494.677 kb on + strand, within SO1431 at 1494.683 kb on - strand, within SO1431
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,490,254 + SO1428 0.54 -0.2 1,490,340 + SO1428 0.58 +0.4 1,490,358 + SO1428 0.59 +1.6 1,490,366 - SO1428 0.60 +1.5 1,490,406 + SO1428 0.62 +0.9 1,490,470 + SO1428 0.65 +0.2 1,490,471 + SO1428 0.65 +0.4 1,490,476 + SO1428 0.65 -1.2 1,490,484 - SO1428 0.66 -0.2 1,490,608 - SO1428 0.72 +1.5 1,490,844 - SO1428 0.84 +1.6 1,490,867 + SO1428 0.85 +2.2 1,490,932 - SO1428 0.88 +0.1 1,490,958 - SO1428 0.89 +0.3 1,490,968 - SO1428 0.90 +0.4 1,490,972 + -0.6 1,490,980 - -0.8 1,490,982 - -0.3 1,490,996 + +1.3 1,491,201 - -0.6 1,491,221 + -0.2 1,491,221 + -0.5 1,491,221 + -0.8 1,491,221 + -0.1 1,491,221 + +0.2 1,491,229 - -0.2 1,491,229 - -2.8 1,491,229 - -0.8 1,491,229 - -1.5 1,491,229 - -0.0 1,491,229 - -1.8 1,491,229 - +0.1 1,491,446 + dmaA-1 SO1429 0.10 -0.6 1,491,447 - dmaA-1 SO1429 0.10 +2.5 1,491,469 + dmaA-1 SO1429 0.11 -0.1 1,491,504 + dmaA-1 SO1429 0.13 +0.9 1,491,504 + dmaA-1 SO1429 0.13 -0.6 1,491,506 + dmaA-1 SO1429 0.13 -0.5 1,491,506 + dmaA-1 SO1429 0.13 -0.2 1,491,506 + dmaA-1 SO1429 0.13 +0.8 1,491,506 + dmaA-1 SO1429 0.13 -0.2 1,491,506 + dmaA-1 SO1429 0.13 -1.1 1,491,506 + dmaA-1 SO1429 0.13 -0.5 1,491,506 + dmaA-1 SO1429 0.13 -3.3 1,491,514 - dmaA-1 SO1429 0.13 -0.2 1,491,514 - dmaA-1 SO1429 0.13 -0.1 1,491,514 - dmaA-1 SO1429 0.13 -0.6 1,491,514 - dmaA-1 SO1429 0.13 +0.6 1,491,514 - dmaA-1 SO1429 0.13 -1.7 1,491,514 - dmaA-1 SO1429 0.13 -1.8 1,491,514 - dmaA-1 SO1429 0.13 +2.2 1,491,514 - dmaA-1 SO1429 0.13 +0.2 1,491,514 - dmaA-1 SO1429 0.13 +0.9 1,491,514 - dmaA-1 SO1429 0.13 +1.2 1,491,645 - dmaA-1 SO1429 0.18 -1.8 1,491,645 - dmaA-1 SO1429 0.18 +1.0 1,491,740 - dmaA-1 SO1429 0.22 -0.7 1,491,836 + dmaA-1 SO1429 0.26 +0.9 1,491,872 + dmaA-1 SO1429 0.27 -0.1 1,491,940 + dmaA-1 SO1429 0.30 -1.0 1,491,940 + dmaA-1 SO1429 0.30 -0.3 1,491,979 - dmaA-1 SO1429 0.32 -1.4 1,492,051 + dmaA-1 SO1429 0.34 +0.2 1,492,051 + dmaA-1 SO1429 0.34 -0.1 1,492,192 - dmaA-1 SO1429 0.40 -0.2 1,492,262 + dmaA-1 SO1429 0.43 -0.3 1,492,360 - dmaA-1 SO1429 0.47 -0.8 1,492,360 - dmaA-1 SO1429 0.47 -0.3 1,492,374 - dmaA-1 SO1429 0.47 -1.7 1,492,458 - dmaA-1 SO1429 0.51 +0.5 1,492,469 + dmaA-1 SO1429 0.51 -0.4 1,492,484 + dmaA-1 SO1429 0.52 -0.0 1,492,484 + dmaA-1 SO1429 0.52 -1.1 1,492,484 + dmaA-1 SO1429 0.52 -1.6 1,492,492 - dmaA-1 SO1429 0.52 +1.5 1,492,599 - dmaA-1 SO1429 0.56 +1.0 1,492,601 + dmaA-1 SO1429 0.56 -1.5 1,492,601 + dmaA-1 SO1429 0.56 -1.1 1,492,681 + dmaA-1 SO1429 0.59 -1.1 1,492,692 + dmaA-1 SO1429 0.60 -3.9 1,492,719 + dmaA-1 SO1429 0.61 -0.9 1,492,727 - dmaA-1 SO1429 0.61 +1.4 1,492,876 + dmaA-1 SO1429 0.67 -2.6 1,492,983 + dmaA-1 SO1429 0.71 +0.3 1,493,078 + dmaA-1 SO1429 0.75 -0.7 1,493,086 - dmaA-1 SO1429 0.76 -2.0 1,493,124 + dmaA-1 SO1429 0.77 -0.0 1,493,175 - dmaA-1 SO1429 0.79 -0.8 1,493,247 + dmaA-1 SO1429 0.82 -0.9 1,493,343 + dmaA-1 SO1429 0.86 +0.2 1,493,343 + dmaA-1 SO1429 0.86 -1.2 1,493,370 + dmaA-1 SO1429 0.87 +0.6 1,493,423 + dmaA-1 SO1429 0.89 -0.9 1,493,431 - dmaA-1 SO1429 0.89 -0.3 1,493,505 + +0.2 1,493,513 - +0.3 1,493,551 + -0.2 1,493,676 - -0.1 1,493,692 + -1.1 1,493,700 - -0.1 1,493,700 - -0.8 1,493,805 + dmsB-1 SO1430 0.14 -1.2 1,493,813 - dmsB-1 SO1430 0.15 -1.5 1,493,970 - dmsB-1 SO1430 0.38 -0.3 1,493,970 - dmsB-1 SO1430 0.38 -0.5 1,493,981 + dmsB-1 SO1430 0.40 -0.3 1,493,991 + dmsB-1 SO1430 0.41 +0.0 1,493,991 + dmsB-1 SO1430 0.41 +0.2 1,493,991 + dmsB-1 SO1430 0.41 +0.4 1,494,142 + dmsB-1 SO1430 0.64 -2.0 1,494,157 + dmsB-1 SO1430 0.66 +0.4 1,494,262 + dmsB-1 SO1430 0.81 -0.2 1,494,381 - -4.0 1,494,495 + +0.8 1,494,508 + -2.2 1,494,515 + SO1431 0.11 +0.5 1,494,523 - SO1431 0.12 -1.4 1,494,595 - SO1431 0.23 +2.5 1,494,677 + SO1431 0.35 +1.9 1,494,683 - SO1431 0.36 +0.4
Or see this region's nucleotide sequence