Strain Fitness in Shewanella oneidensis MR-1 around SO1427

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,487,227	+				-0.2
1,487,228	+				+0.6
1,487,236	-				-0.5
1,487,269	+				+1.0
1,487,275	+				+0.1
1,487,283	-				-3.0
1,487,283	-				+0.1
1,487,283	-				-0.1
1,487,313	+				-1.5
1,487,313	+				-2.6
1,487,319	+				+0.9
1,487,321	-				+0.2
1,487,321	-				-1.7
1,487,369	+				-0.2
1,487,382	-				+0.2
1,487,382	-				-1.3
1,487,382	-				+2.0
1,487,383	-				-0.1
1,487,388	-				-0.1
1,487,429	+				+0.4
1,487,458	+				-0.8
1,487,516	-				-0.7
1,487,532	-				-0.0
1,487,535	+				-0.2
1,487,539	+				-0.3
1,487,540	+				+0.2
1,487,543	-				-0.7
1,487,590	-				+0.9
1,487,652	+				-1.9
1,487,652	+				-0.8
1,487,652	+				+0.6
1,487,660	-				-0.5
1,487,660	-				-0.1
1,487,662	-				+1.2
1,487,687	+				-1.1
1,487,688	+				-0.1
1,487,696	-				+0.7
1,487,699	+				+0.5
1,487,707	+				+0.9
1,487,707	+				+0.5
1,487,715	-				+0.7
1,487,715	-				-0.9
1,487,715	-				-0.5
1,487,715	-				+1.1
1,487,715	-				-3.0
1,487,723	+				-0.8
1,487,723	+				-1.7
1,487,723	+				+0.7
1,487,740	+				-0.8
1,487,741	+				-0.0
1,487,749	-				+0.5
1,487,749	-				-1.4
1,487,752	+				-1.9
1,487,757	+				+1.6
1,487,761	-				+0.8
1,487,765	-				-0.3
1,487,765	-				+1.5
1,487,765	-				-0.2
1,487,766	+				-1.4
1,487,766	+				+1.4
1,487,766	-				+1.3
1,487,766	-				-0.7
1,487,766	-				-1.1
1,487,774	-				-0.9
1,487,774	-				-1.2
1,487,774	-				-1.5
1,487,833	+				+0.0
1,487,849	-				-0.5
1,487,905	+				-1.3
1,487,905	+				-1.8
1,487,908	-				+0.8
1,487,915	+				-1.3
1,487,915	+				+0.2
1,488,129	+				-0.0
1,488,137	-				-1.5
1,488,144	+				-1.7
1,488,275	+				+2.1
1,488,309	+		SO1427	0.10	+0.5
1,488,363	+		SO1427	0.16	-0.6
1,488,365	+		SO1427	0.16	+0.0
1,488,365	+		SO1427	0.16	-0.1
1,488,365	+		SO1427	0.16	+0.9
1,488,419	-		SO1427	0.22	-0.5
1,488,432	-		SO1427	0.23	+0.2
1,488,434	+		SO1427	0.24	+0.2
1,488,434	+		SO1427	0.24	-0.0
1,488,434	+		SO1427	0.24	-0.4
1,488,434	+		SO1427	0.24	+0.4
1,488,437	+		SO1427	0.24	-0.1
1,488,442	-		SO1427	0.24	+0.7
1,488,442	-		SO1427	0.24	+0.6
1,488,483	-		SO1427	0.29	-0.2
1,488,492	+		SO1427	0.30	-0.8
1,488,492	+		SO1427	0.30	-2.1
1,488,492	+		SO1427	0.30	+0.4
1,488,492	+		SO1427	0.30	-0.4
1,488,492	+		SO1427	0.30	-0.8
1,488,492	+		SO1427	0.30	-2.3
1,488,492	+		SO1427	0.30	-0.8
1,488,492	+		SO1427	0.30	+0.2
1,488,492	+		SO1427	0.30	-0.6
1,488,492	+		SO1427	0.30	-1.7
1,488,492	+		SO1427	0.30	-1.8
1,488,492	+		SO1427	0.30	-0.7
1,488,492	+		SO1427	0.30	-1.0
1,488,492	+		SO1427	0.30	-0.8
1,488,492	+		SO1427	0.30	-0.7
1,488,500	-				-1.0
1,488,500	-		SO1427	0.30	-2.6
1,488,500	-		SO1427	0.30	-0.8
1,488,500	-		SO1427	0.30	-0.8
1,488,500	-		SO1427	0.30	+0.5
1,488,500	-		SO1427	0.30	-0.2
1,488,500	-		SO1427	0.30	+0.9
1,488,500	-		SO1427	0.30	-0.2
1,488,500	-		SO1427	0.30	-2.0
1,488,500	-		SO1427	0.30	-0.5
1,488,500	-		SO1427	0.30	-1.0
1,488,500	-		SO1427	0.30	+0.3
1,488,500	-		SO1427	0.30	+0.0
1,488,500	-		SO1427	0.30	-0.9
1,488,500	-		SO1427	0.30	+1.6
1,488,500	-		SO1427	0.30	-1.5
1,488,500	-		SO1427	0.30	-0.7
1,488,500	-		SO1427	0.30	-1.5
1,488,500	-		SO1427	0.30	+1.4
1,488,500	-		SO1427	0.30	-1.7
1,488,500	-		SO1427	0.30	-0.8
1,488,500	-		SO1427	0.30	+0.3
1,488,500	-		SO1427	0.30	+0.9
1,488,500	-		SO1427	0.30	-0.8
1,488,500	-		SO1427	0.30	-1.7
1,488,500	-		SO1427	0.30	+1.9
1,488,500	-		SO1427	0.30	-0.7
1,488,500	-		SO1427	0.30	-3.4
1,488,500	-		SO1427	0.30	-1.5
1,488,500	-		SO1427	0.30	+0.2
1,488,500	-		SO1427	0.30	+0.4
1,488,500	-		SO1427	0.30	-0.4
1,488,500	-		SO1427	0.30	-0.7
1,488,500	-		SO1427	0.30	-1.3
1,488,500	-		SO1427	0.30	-1.2
1,488,500	-		SO1427	0.30	+0.4
1,488,501	+		SO1427	0.31	-3.4
1,488,509	-		SO1427	0.31	-0.7
1,488,510	-		SO1427	0.31	+0.7
1,488,511	+		SO1427	0.32	-0.3
1,488,511	+		SO1427	0.32	-3.1
1,488,511	+		SO1427	0.32	-1.1
1,488,514	+		SO1427	0.32	-0.4
1,488,519	-		SO1427	0.32	-1.7
1,488,522	-		SO1427	0.33	+0.6
1,488,530	+		SO1427	0.34	-0.3
1,488,532	-		SO1427	0.34	+0.7
1,488,548	+		SO1427	0.35	+0.3
1,488,551	-		SO1427	0.36	-1.5
1,488,556	-		SO1427	0.36	-0.3
1,488,556	-		SO1427	0.36	+0.9
1,488,556	-		SO1427	0.36	-0.7
1,488,556	-		SO1427	0.36	+0.6
1,488,556	-		SO1427	0.36	+0.2
1,488,558	+		SO1427	0.36	-0.6
1,488,558	+		SO1427	0.36	+0.6
1,488,567	-		SO1427	0.37	-0.6
1,488,570	-		SO1427	0.38	+0.1
1,488,629	+		SO1427	0.44	+2.5
1,488,631	-		SO1427	0.44	+0.7
1,488,636	+		SO1427	0.45	-0.2
1,488,679	+		SO1427	0.49	-0.8
1,488,713	-		SO1427	0.53	+1.3
1,488,727	+		SO1427	0.54	-0.2
1,488,727	+		SO1427	0.54	-0.9
1,488,727	+		SO1427	0.54	+1.6
1,488,800	+		SO1427	0.62	+0.6
1,488,808	-		SO1427	0.63	+0.4
1,488,834	-		SO1427	0.65	+0.5
1,488,841	-		SO1427	0.66	-1.3
1,488,909	+		SO1427	0.73	+1.2
1,488,924	+		SO1427	0.75	-0.2
1,488,973	-		SO1427	0.80	-1.5
1,489,091	+				+0.3
1,489,091	+				-1.7
1,489,091	+				+1.9
1,489,091	+				+0.1
1,489,099	-				-1.4
1,489,099	-				-0.4
1,489,099	-				-0.4
1,489,136	-				+1.6
1,489,270	-				-0.7
1,489,270	-				+2.3
1,489,277	+				-0.1
1,489,277	+				+0.1
1,489,277	+				-2.2
1,489,285	-				+0.2
1,489,323	-				+0.0
1,489,326	+				+0.4
1,489,334	-				+0.9
1,489,349	+				-1.1
1,489,357	-				+0.4
1,489,505	+		SO1428	0.16	-0.2
1,489,526	+		SO1428	0.17	-2.4
1,489,605	+		SO1428	0.21	-1.4
1,489,784	+		SO1428	0.30	-1.0
1,489,866	+		SO1428	0.34	-0.3
1,489,874	-		SO1428	0.35	+0.2
1,489,991	-		SO1428	0.41	+0.8
1,490,026	+		SO1428	0.43	+2.5
1,490,094	+		SO1428	0.46	-2.0
1,490,138	+		SO1428	0.48	-1.2