Strain Fitness in Shewanella oneidensis MR-1 around SO1224

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,269,773	+	serB	SO_1223	0.20	+0.4
1,269,818	-	serB	SO_1223	0.24	+1.2
1,269,833	+	serB	SO_1223	0.26	-0.3
1,269,838	+	serB	SO_1223	0.26	-2.2
1,269,903	+	serB	SO_1223	0.33	-1.3
1,270,109	+	serB	SO_1223	0.53	+2.5
1,270,109	+	serB	SO_1223	0.53	+0.2
1,270,117	-	serB	SO_1223	0.54	+0.2
1,270,117	-	serB	SO_1223	0.54	-0.4
1,270,125	-	serB	SO_1223	0.55	+0.3
1,270,142	-	serB	SO_1223	0.57	+1.2
1,270,193	+	serB	SO_1223	0.62	-1.9
1,270,193	+	serB	SO_1223	0.62	-0.6
1,270,193	+	serB	SO_1223	0.62	+1.4
1,270,201	-	serB	SO_1223	0.63	-0.1
1,270,234	+	serB	SO_1223	0.66	-0.7
1,270,335	-	serB	SO_1223	0.76	-0.7
1,270,358	+	serB	SO_1223	0.78	-1.3
1,270,358	+	serB	SO_1223	0.78	-3.1
1,270,358	+	serB	SO_1223	0.78	-1.0
1,270,358	+	serB	SO_1223	0.78	-0.3
1,270,366	-	serB	SO_1223	0.79	+0.3
1,270,440	+	serB	SO_1223	0.87	-1.7
1,270,718	+				-0.3
1,270,966	-		SO1224	0.30	+0.1
1,271,043	+		SO1224	0.37	+0.7
1,271,133	+		SO1224	0.47	-0.1
1,271,277	-		SO1224	0.61	+1.3
1,271,355	-		SO1224	0.69	-1.2
1,271,357	+		SO1224	0.69	-0.1
1,271,453	+		SO1224	0.79	-0.8
1,271,453	+		SO1224	0.79	-3.4
1,271,453	+		SO1224	0.79	-0.1
1,271,453	+		SO1224	0.79	+1.2
1,271,461	-		SO1224	0.80	+1.7
1,271,461	-		SO1224	0.80	-2.1
1,271,461	-		SO1224	0.80	+1.8
1,271,461	-		SO1224	0.80	-1.7
1,271,461	-		SO1224	0.80	+2.5
1,271,653	+				-0.9
1,271,653	-				+0.1
1,271,661	-				-1.1
1,271,756	+				+1.5
1,271,828	+				-0.5
1,271,935	+		SO1225	0.11	+1.1
1,272,151	+		SO1225	0.20	+2.5
1,272,151	+		SO1225	0.20	+1.4
1,272,163	+		SO1225	0.21	+1.2
1,272,163	+		SO1225	0.21	+1.1
1,272,171	-		SO1225	0.21	-0.1
1,272,171	-		SO1225	0.21	+0.5
1,272,171	-		SO1225	0.21	+1.2
1,272,362	+		SO1225	0.29	+0.6
1,272,370	-		SO1225	0.29	+1.3
1,272,404	+		SO1225	0.31	+0.8
1,272,404	+		SO1225	0.31	+0.9
1,272,412	-		SO1225	0.31	+0.9
1,272,413	-		SO1225	0.31	+1.5
1,272,463	-		SO1225	0.33	-0.9
1,272,486	+		SO1225	0.34	-0.6
1,272,503	-		SO1225	0.35	-1.3
1,272,519	+		SO1225	0.36	+0.7
1,272,541	-		SO1225	0.37	+0.1
1,272,568	+		SO1225	0.38	-0.9
1,272,575	-		SO1225	0.38	-0.1
1,272,575	-		SO1225	0.38	-0.8
1,272,576	-		SO1225	0.38	-1.1